BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZE04RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1415 0.0
>3x_Contig1426
Length = 8319
Score = 1415 bits (714), Expect = 0.0
Identities = 808/829 (97%), Gaps = 8/829 (0%)
Strand = Plus / Plus
Query: 46 tatcctcc-gtaaactgacca-tgaagttcgccatattcaggtatattccgtcttctacc 103
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 5472 tatcctccagtaaactgaccaatgaagttcgccatattcaggtatattccgtcttctacc 5531
Query: 104 aaaatttggcacgtaaacgtttttccattcacacttttcgttttcgattcttattcctat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5532 aaaatttggcacgtaaacgtttttccattcacacttttcgttttcgattcttattcctat 5591
Query: 164 tggaatcaattcagcaatccaccaaaaaatcaccctaaagatactcacatttccacttcc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5592 tggaatcaattcagcaatccaccaaaaaatcaccctaaagatactcacatttccacttcc 5651
Query: 224 atcattttttttttgacgaccgatgtccttccctggttcatcagtatcaaaaccttgctc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5652 atcattttttttttgacgaccgatgtccttccctggttcatcagtatcaaaaccttgctc 5711
Query: 284 aagatcagaacaactagatggtgattccgttttccagttaaacgttctgaagtaaacgtt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5712 aagatcagaacaactagatggtgattccgttttccagttaaacgttctgaagtaaacgtt 5771
Query: 344 ctctgttttatgacgccacggtaaccaacttctctttgatggcagtttgaagccgtggta 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5772 ctctgttttatgacgccacggtaaccaacttctctttgatggcagtttgaagccgtggta 5831
Query: 404 tctattaatttgatcttcatcatattcattagtctcttttttgtgaaatgggtttttcat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5832 tctattaatttgatcttcatcatattcattagtctcttttttgtgaaatgggtttttcat 5891
Query: 464 agtaagattgctctttttgaaactcaaaagatcgtgcgatgctgacaataagcttccagc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5892 agtaagattgctctttttgaaactcaaaagatcgtgcgatgctgacaataagcttccagc 5951
Query: 524 agatgtatatttgccagcaaattcatggatgattccttttttaaaaagtacttcggattt 583
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5952 agatgtatatttgccagcaaattcatggatgattccttttttaaaaagtactccggattt 6011
Query: 584 gatcgcttctgagagaatccatcttagagacatatcacttnaaaaaagatttttctcagt 643
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 6012 gatcgcttctgagagaatccatcttagagacatatcacttaaaaaatgatttttctcagt 6071
Query: 644 gatatccggtgggcaacttccaccaatatctgagtgatcgcctggaaaccacttctctat 703
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6072 gatatccggtggccaactcccaccaatatctgagtgatcgcctggaaaccacttctctat 6131
Query: 704 tagatccgatgatgtccttttactatc-aaagtaccatggggagagtccacctcggatat 762
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 6132 tagatccgatgatgtccttttactatcaaaagtaccatggggagagtccacctcgaatat 6191
Query: 763 actttcaactctttggttc-cgaaattatctgttccttgggaaatggtccagcttctagg 821
|| ||||||||| |||||| ||||||||||||||| ||||| |||| |||||| ||||||
Sbjct: 6192 accttcaactctctggttcacgaaattatctgttctttggg-aatgttccagc-tctagg 6249
Query: 822 aaatttgtggattcgggatattagttcttggacgggctttactagattg 870
||| |||| ||||||||||||||||||||| |||| | |||||||||||
Sbjct: 6250 aaa-ttgttgattcgggatattagttcttgtacggac-ttactagattg 6296
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8028
Number of Sequences: 1807
Number of extensions: 8028
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)