BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZE06RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1540 1368 0.0
>3x_Contig1540
Length = 9505
Score = 1368 bits (690), Expect = 0.0
Identities = 819/854 (95%), Gaps = 8/854 (0%)
Strand = Plus / Minus
Query: 48 ccttggaacaaatggaccataaaagaccatgattccagatcattgggaagatttgttcta 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3202 ccttggaacaaatggaccagaaaagaccatgattccagatcattgggaagatttgttcta 3143
Query: 108 ccattaacaacaataatatcaatgaaacgctggtcaataccaagttatgcaattggaaca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3142 ccattaacaacaataatatcaatgaaacgctggtcaataccaagttatgcaattggaaca 3083
Query: 168 aaaagttcaacttcaatggggcagcattggccttacgtagcaatgcttgaccaccgaaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3082 aaaagttcaacttcaatggggcagcattggccttacgtagcaatgcttgaccaccgaaaa 3023
Query: 228 taacgatataataaacgattatcgcagcaatggcataataaccattggccataaatgtct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3022 taacgatataataaacgattatcgcagcaatggcataataaccattggccataaatgtct 2963
Query: 288 tgttgtgaacgaattcgaattcatcagctggataacccttgacatactcgaaggccttgc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2962 tgttgtgaacgaattcgaattcatcagctggataacccttgacatactcgaaggccttgc 2903
Query: 348 tgaaaatcggccacaaatgcaaaccaaaaggcctttctggacttgggatatcgtattcaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2902 tgaaaatcggccacaaatgcaaaccaaaaggcctttctggacttgggatatcgtattcaa 2843
Query: 408 tccacgagcatccatttaagttatctaaaacttgtttgaaacccgattgaatgtcactca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2842 tccacgagcatccatttaagttatctaaaacttgtttgaaacccgattgaatgtcactca 2783
Query: 468 ttattttttatgctaaaatttcaaaaacttgtcacgagtattagtaatatgatccttatt 527
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2782 ttattttttaggctaaaatttcaaaaacttgtcacgagtattagtaatatgatccttatt 2723
Query: 528 caacgtgataatccaaaccgtataatatgggttgttcagtcaaatttcagatgccaaatt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2722 caacgtgataatccaaaccgtataatatgggttgttcagtcaaatttcagatgccaaatt 2663
Query: 588 acgtcttattctgttcagaaaaaaaaactatcaacanagaactgatatccagacacaaac 647
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2662 acgtcttattctgttcagaaaaaaaaactatcaacaaagaactgatatccagacacaaac 2603
Query: 648 tagatcaggttactataacgccaaagcanatagatagacaaaaattgaaaagataa-gat 706
|||||||||||||||||||||||||||| | ||| |||||||||| ||||||| || ||
Sbjct: 2602 tagatcaggttactataacgccaaagcaaaaagaaagacaaaaatagaaaagaaaaggaa 2543
Query: 707 tagattcgtcgtaagcgcctaactttctt-actctgaga-cagcgccttagtttcaaaat 764
|||| ||||||||||||||||| ||| ||||||||| |||||||||||||||||||
Sbjct: 2542 aagatcgttcgtaagcgcctaacttccttaactctgagagcagcgccttagtttcaaaaa 2483
Query: 765 tcc--atgggttggactggttctatgtattgaattttaaa-catcatcgcatttct-tat 820
||| |||||||| ||||||||||||||||||| |||||| ||||||||||| ||| |||
Sbjct: 2482 tcccaatgggttgtactggttctatgtattgaaatttaaagcatcatcgcatatctctat 2423
Query: 821 ttaatcgnatgtatgttaaattttttatgttccagtaa-gaatcccggattttaattttt 879
|||||| |||||||||||| | ||||||||| ||||| |||||| | |||||||||||
Sbjct: 2422 ataatcgtatgtatgttaaaatctttatgttcgagtaacgaatcctgatttttaattttt 2363
Query: 880 cattttggttttca 893
||||||| ||||||
Sbjct: 2362 cattttgtttttca 2349
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8315
Number of Sequences: 1807
Number of extensions: 8315
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)