BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZE10FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1185 1148 0.0
>3x_Contig1185
Length = 4803
Score = 1148 bits (579), Expect = 0.0
Identities = 673/700 (96%), Gaps = 15/700 (2%)
Strand = Plus / Minus
Query: 88 tcctaacttgttcgatgcattacaaggtttagatttgaataatgaacttaaaagattgct 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4368 tcctaacttgttcgatgcattacaaggtttagatttgaataatgaacttaaaagattgct 4309
Query: 148 ttctgtgttgcactcatatttatcaacttttgaaaatacaaaggtgctatattttgcttc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4308 ttctgtgttgcactcatatttatcaacttttgaaaatacaaaggtgctatattttgcttc 4249
Query: 208 gaattattcatcatttaccgctaaaaacttcatggttttgccccgaaacaccatcgaaag 267
|||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 4248 gaattattcatcatttaccgct-aaaactt---------gccccgaaacaccatcgaaag 4199
Query: 268 tttggaaatctttgaaaattcgaccactaacaaaaccaatggttctctattgtgggttat 327
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4198 tttggaaatctttgacaattcgaccactaacaaaaccaatggttctctattgtgggttat 4139
Query: 328 ggatcatacgagaactcaatttggttatagacttttacgaaaatggatatctaaaccact 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4138 ggatcatacgagaactcaatttggttatagacttttacgaaaatggatatctaaaccact 4079
Query: 388 gatagatttaaaatcgatccttgacaggcaagatgctatcacttgcattatgaaagaagt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4078 gatagatttaaaatcgatccttgacaggcaagatgctatcacttgcattatgaaagaagt 4019
Query: 448 tcacagcatttttttcgaatccttcaacgaactactgagaaaaagcatagaccttgaacg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4018 tcacagcatttttttcgaatccttcaacgaactactgagaaaaagcatagaccttgaacg 3959
Query: 508 cgcactcaatagaatagcttatggtagtacatcaagaaaagaagtttatttcttcctana 567
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3958 cgcactcaatagaatagcttatggtagtacatcaagaaaagaagtttatttcttcctaaa 3899
Query: 568 acagattgcaactttcgcatctcttttcaaatcacatcacactttcattcatgaccaact 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3898 acagattgcaactttcgcatctcttttcaaatcacatcacactttcattcatgaccaact 3839
Query: 628 gcantaagagaattcagcattgcgcaaaacctcctgtctattggtc-atattttgcaaaa 686
||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 3838 gcataaagagaattcagcattgcgcaaaacctcctgtctattgttcaatattttgcaaaa 3779
Query: 687 cttagatgcattttttagtgctactgaatcttcctttttttctacaaatgaacaaacgtc 746
|||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||
Sbjct: 3778 cttagatgcattttttagtgctactg-atcttcctctttttctacaaatgatc-aacgtc 3721
Query: 747 aatgctgcttttggaataagaattcccaaaaaaacgtcat 786
|||||||||| | |||| ||||||| |||||||||||
Sbjct: 3720 gatgctgcttt--ggataaagattcccataaaaacgtcat 3683
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8226
Number of Sequences: 1807
Number of extensions: 8226
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)