BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZE10RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1651 791 0.0
3x_Contig1782 424 e-118
3x_Contig869 131 3e-30
3x_Contig1717 127 4e-29
3x_Contig278 103 6e-22
>3x_Contig1651
Length = 13087
Score = 791 bits (399), Expect = 0.0
Identities = 413/415 (99%), Gaps = 2/415 (0%)
Strand = Plus / Plus
Query: 47 gcttttcaaggccgaactaatctatatcagatgtgtttttataagatgaaaggattgcag 106
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12667 gcttttcaag-ccgaactaatctatatcagatgtgtttttataagatgaaaggattgcag 12725
Query: 107 aggactaatacgttgaaattaaggttcttaaaaaaacagattggagatttacgtgtcatc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12726 aggactaatacgttgaaattaaggttcttaaaaaaacagattggagatttacgtgtcatc 12785
Query: 167 ataagtttgaatagaattacggaatattaaaaacatctaaaccagtaccactcaccacta 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12786 ataagtttgaatagaattacggaatattaaaaacatctaaaccagtaccactcaccacta 12845
Query: 227 taattcccagaaaagtgattatttggtgttgcattggagaagacacacattttgtttccg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12846 taattcccagaaaagtgattatttggtgttgcattggagaagacacacattttgtttccg 12905
Query: 287 acggt-catatatctattacagtaccttggtagttaataagaggagaaactaaaaaaaga 345
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12906 acggtgcatatatctattacagtaccttggtagttaataagaggagaaactaaaaaaaga 12965
Query: 346 ggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccactac 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12966 ggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccactac 13025
Query: 406 actatagaaccgaaattcttacgaaggcgccaaaaaacactggtttcaaattgcg 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13026 actatagaaccgaaattcttacgaaggcgccaaaaaacactggtttcaaattgcg 13080
>3x_Contig1782
Length = 24703
Score = 424 bits (214), Expect = e-118
Identities = 342/374 (91%), Gaps = 8/374 (2%)
Strand = Plus / Minus
Query: 461 ggcagtagcatgtcttcagccaactgccctctctcattcacaaaattaggttcgcatatt 520
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 24703 ggcagtagcatgtcttcagccaactgcgttctctcattcacaaaattaggttcgcatatt 24644
Query: 521 caccacacatagat-ccaacaaatgggaaattaaattgtagcctttgtagcttgttaaat 579
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643 caccacacatagatcccaacaaatgggaaattaaattgtagcctttgtagcttgttaaat 24584
Query: 580 ctaaaat-acgttacctcttttctttccattattattcagacattttcattttaataa-t 637
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 24583 ctaaaataacgttacctcttttctttccattattattcagacattttcatttaaataatt 24524
Query: 638 gctgggcttattttaattgttaaatggccaaacttactcacaaaggttctaatcaacaaa 697
|||| ||||||||||||||||||| ||||||| ||||||||| |||||||| |||||
Sbjct: 24523 gctgtctttattttaattgttaaatgtccaaactaactcacaaatgttctaattcacaaa 24464
Query: 698 gcacctcgggctaagttc-aacttatagtgaaaattacttcagttagtgcattaaaatgc 756
||| || ||||||| || |||||||||||||||||||||||||||||||||| | ||||
Sbjct: 24463 gcaacttcggctaaggtcaaacttatagtgaaaattacttcagttagtgcatt-agatgc 24405
Query: 757 ttatgaatgaaacggcaaagcttagtatggcttaacttaacctggttccaaaaaaaaaag 816
| |||| || ||||||| ||| |||||| |||| |||| | || ||||||||||||||||
Sbjct: 24404 tgatgagtg-aacggcagagcatagtat-gcttcactt-agcttgttccaaaaaaaaaag 24348
Query: 817 taaaaaaaccaatg 830
||||||||| ||||
Sbjct: 24347 taaaaaaacaaatg 24334
>3x_Contig869
Length = 2873
Score = 131 bits (66), Expect = 3e-30
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 345 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 404
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 1064
Query: 405 cactatagaaccga 418
||||||| ||||||
Sbjct: 1065 cactatacaaccga 1078
>3x_Contig1717
Length = 18389
Score = 127 bits (64), Expect = 4e-29
Identities = 70/72 (97%)
Strand = Plus / Minus
Query: 345 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 404
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 1708
Query: 405 cactatagaacc 416
||||||| ||||
Sbjct: 1707 cactatacaacc 1696
>3x_Contig278
Length = 1114
Score = 103 bits (52), Expect = 6e-22
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 345 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataacc 400
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataacc 1048
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8493
Number of Sequences: 1807
Number of extensions: 8493
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 5
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)