BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZE11RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1526 1306 0.0
>3x_Contig1526
Length = 11842
Score = 1306 bits (659), Expect = 0.0
Identities = 764/791 (96%), Gaps = 6/791 (0%)
Strand = Plus / Plus
Query: 42 gctttattggaaaaatggaaggaattcagacaaacagttgaatcatttgaattacaatcc 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gctttattggaaaaatggaaggaattcagacaaacagttgaatcatttgaattacaatcc 836
Query: 102 tctactttggaaaactcgtttgtgtttaattttgtggaaggttctttggtgaaggctgtc 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tctactttggaaaactcgtttgtgtttaattttgtggaaggttctttggtgaaggctgtc 896
Query: 162 agaaatggagaatggttgttattggatgaagtcaacttggcctcggcagacacgcttgaa 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 agaaatggagaatggttgttattggatgaagtcaacttggcctcggcagacacgcttgaa 956
Query: 222 aacatagctgatttgctttcagaaagtgactctagaagtatacttctatctgaaaaaggt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 aacatagctgatttgctttcagaaagtgactctagaagtatacttctatctgaaaaaggt 1016
Query: 282 gaggcagaatcgataaaagcccatccagatttcagaattttcgcttgtatgaaccctgct 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 gaggcagaatcgataaaagcccatccagatttcagaattttcgcttgtatgaaccctgct 1076
Query: 342 acagatgtcggtaagagagatttaccaccaggtattcgatcaagatttaccgaagtttat 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 acagatgtcggtaagagagatttaccaccaggtattcgatcaagatttaccgaagtttat 1136
Query: 402 gttcattctcctgaccgtgacatctctgatctattgtctatcattgacaagtacatttca 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1137 gttcattctcctgaccgtgacatctctgatctattgtctatcattgacaagtacatttca 1196
Query: 462 aagtatagcgtaagcgacgaatgggttggtaacgacatcgctgaactttatttagaagca 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1197 aagtatagcgtaagcgacgaatgggttggtaacgacatcgctgaactttatttagaagca 1256
Query: 522 aaaaggcttgcagaagctaataagattgtcgatggttccaatcaaagaccccatttcagc 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1257 aaaaggcttgcagaagctaataagattgtcgatggttccaatcaaagaccccatttcagc 1316
Query: 582 atccgtacattgaccagaacattactttatgtcacggacattgtacatatttatggccta 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1317 atccgtacattgaccagaacattactttatgtcacggacattgtacatatttatggccta 1376
Query: 642 agacgatctttgtacgatagattttgtattgcattttt-acactgttgaatct-ccctca 699
||||||||||||||||| |||||||||| |||||||| |||||||||||||| || |||
Sbjct: 1377 agacgatctttgtacgaaggattttgtatggcatttttaacactgttgaatctaccatca 1436
Query: 700 gaggaattattaagggggattattgagaaa-tcattcttagtag-attaaaaatccactt 757
||||||||||||||||||||||| |||||| |||| || |||| || |||||||||| |
Sbjct: 1437 gaggaattattaagggggattatagagaaattcatcctaggtagaataaaaaatccacat 1496
Query: 758 tttg-catgttttcaatttccttcttcttcaggtattatttttgttcagttcagaacttt 816
| || |||| | |||| ||||| ||||| |||||| || || ||||||||||||| ||
Sbjct: 1497 tctgtcatg-tctcaaattcctccttctccaggtactaattatgttcagttcagacatta 1555
Query: 817 ttggatgaaac 827
|||||||||||
Sbjct: 1556 ttggatgaaac 1566
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9898
Number of Sequences: 1807
Number of extensions: 9898
Number of successful extensions: 126
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)