BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZE12RM1.SCF screened BAC_end
         (930 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1612                                                        1318   0.0  

>3x_Contig1612 
          Length = 15608

 Score = 1318 bits (665), Expect = 0.0
 Identities = 698/708 (98%), Gaps = 1/708 (0%)
 Strand = Plus / Minus

                                                                         
Query: 41    ctttgtcgtgatcaccatggaacaaagttaagaaagaagcttgggtaccggtggtaccct 100
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13716 ctttgtcgtgatcaccatggaacaaagttaagaaagaagcttgggtaccggtggtaccct 13657

                                                                         
Query: 101   tgacaccacgtagaccgatatcgtttctagctctgacaaagtttcttatatcccacaata 160
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 13656 tgacaccacgtagaccgatatcgtttctagctctgacaaagtttcttagatcccacaata 13597

                                                                         
Query: 161   gttcttggatccacaatgtgactcttttacccaaggtagtcaattgagctggttggaaat 220
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13596 gttcttggatccacaatgtgactcttttacccaaggtagtcaattgagctggttggaaat 13537

                                                                         
Query: 221   gagtccagcccaatactggtagatccttgtactccaaagcaaacttggacaatctgttga 280
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13536 gagtccagcccaatactggtagatccttgtactccaaagcaaacttggacaatctgttga 13477

                                                                         
Query: 281   taacattgaccaacttatgaatcaagatatcgtaagcatctctcaagaagatcaagtcag 340
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13476 taacattgaccaacttaggaatcaagatatcgtaagcatctctcaagaagatcaagtcag 13417

                                                                         
Query: 341   cattatcggtgacaaaacatgatgtagcacctatatggatgataccagcggctttaggac 400
             |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 13416 cattatcggtgacaaaacatgaggtagcacctagatggatgataccagcggctttaggac 13357

                                                                         
Query: 401   aagtttcaccaaaagtgtgaacgtgagccataacatcgtgtctgacaatggcctcttgct 460
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13356 aagtttcaccaaaagtgtgaacgtgagccataacatcgtgtctgacaatggcctcttgct 13297

                                                                         
Query: 461   tggaagcagcagcgatttcttcatcgttgatggtcaaatgagccttcatttgctcaatgg 520
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13296 tggaagcagcagcgatttcttcatcgttgatggtcaaatgagccttcatttgctcaatgg 13237

                                                                         
Query: 521   cttcttcactaatgacatcaagacctaattccttttcagcaatagccaaattcaaccaaa 580
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13236 cttcttcactaatgacatcaagacctaattccttttcagcaatagccaaattcaaccaaa 13177

                                                                         
Query: 581   gctttctccaggtagagaatctgtttctcaaagagaatatggaagacatctcctcagatg 640
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 13176 gctttctccaggtagagaatctgtttctcaaagagaatatggaagacatctcctcagaag 13117

                                                                         
Query: 641   cataacgagaagatagtgttgtggtgtacttatcgntatcagacatcgctaatgatattt 700
             |||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||
Sbjct: 13116 cataacgagaagatagtggtgtggtgtacttatcgtaatcagacatcgctaatgatattt 13057

                                                             
Query: 701   cttattatattaccctcaattttttttt-aaaccagatttgatacctt 747
             |||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 13056 cttattatattaccctcaatttttttttaaaaccagaattgatacctt 13009


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,643
Number of Sequences: 1807
Number of extensions: 14643
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)