BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZF02FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig178 1183 0.0
3x_Contig1092 916 0.0
3x_Contig1805 478 e-134
3x_Contig1773 147 5e-35
3x_Contig1213 137 4e-32
3x_Contig1670 125 2e-28
3x_Contig1803 111 3e-24
3x_Contig1701 105 2e-22
3x_Contig1806 103 6e-22
>3x_Contig178
Length = 1315
Score = 1183 bits (597), Expect = 0.0
Identities = 672/692 (97%), Gaps = 4/692 (0%)
Strand = Plus / Minus
Query: 88 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggtgcgt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggtgcgt 797
Query: 148 actgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 actgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcga 737
Query: 208 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 677
Query: 268 atcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 atcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgt 617
Query: 328 tggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgttg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgttg 557
Query: 388 gacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 497
Query: 448 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 437
Query: 508 tctattg-aacagagataagcagag-acgtaacgagaaaattaatcttcaatgcgactta 565
||||||| |||| | ||||||| || || |||| | |||||||||||||||||| |||||
Sbjct: 436 tctattgcaacacacataagcacagcacctaaccacaaaattaatcttcaatgccactta 377
Query: 566 gtcaaaactgtatcagattctgttgttctctggcgttgtaggagcctttctaatgcgcca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtcaaaactgtatcagattctgttgttctctggcgttgtaggagcctttctaatgcgcca 317
Query: 626 gttattgaaccaatg-ctaaatacgaagctgagctgagaggaactaggatcagcatcaag 684
||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 316 gttattgaaccaatgcctaaatacgcagctgagctgagaggcactaggatcagcatcaag 257
Query: 685 gctacagcacccagtatttgaacatcagatgtaacaagtatataagtag-aagttccttc 743
||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| | | ||
Sbjct: 256 gctacagcacccagtatttgaacatcagatgcaacaagtatataactagcaagcttcatc 197
Query: 744 atccaaggagaacaccggnagtaattttccta 775
||||||||||||||||| |||||||||||||
Sbjct: 196 atccaaggagaacaccgtaagtaattttccta 165
>3x_Contig1092
Length = 2520
Score = 916 bits (462), Expect = 0.0
Identities = 486/494 (98%)
Strand = Plus / Plus
Query: 88 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggtgcgt 147
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 234 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 293
Query: 148 actgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcga 207
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 294 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 353
Query: 208 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 413
Query: 268 atcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgt 327
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 414 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 473
Query: 328 tggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgttg 387
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 474 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 533
Query: 388 gacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 447
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 593
Query: 448 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 653
Query: 508 tctattgaacagagataagcagagacgtaacgagaaaattaatcttcaatgcgacttagt 567
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 654 tctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggacttagt 713
Query: 568 caaaactgtatcag 581
||||||||||||||
Sbjct: 714 caaaactgtatcag 727
>3x_Contig1805
Length = 19369
Score = 478 bits (241), Expect = e-134
Identities = 289/303 (95%), Gaps = 2/303 (0%)
Strand = Plus / Minus
Query: 612 tttctaatgcgccagttattgaaccaatgctaaatacgaagctgagctgagaggaactag 671
||||||| ||| || ||| ||||||||||||||||| |||| ||||||||||| ||||||
Sbjct: 16947 tttctaaggcgtcatttagtgaaccaatgctaaataagaagttgagctgagagcaactag 16888
Query: 672 gatcagcatcaaggctacagcacccagtatttgaacatcagatgtaacaagtatataagt 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16887 gatcagcatcaaggctacagcacccagtatttgaacatcagatgtaacaagtatataagt 16828
Query: 732 agaagttccttcatccaaggagaacaccggnagtaattttcctatttactc-gaaattcg 790
||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||
Sbjct: 16827 agaagttccttcatccaaggagaacaccgtaagtaattttcctaattactcggaagttcg 16768
Query: 791 tatactggccaccaatacatatctattaattattatcagctacaagncaaatgacatcca 850
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 16767 tatactggccaccaatacatatctattaattattatcagctacaagtcaaatgacatcca 16708
Query: 851 tttacatgaatactaccaaccctctgaggcaaactccctactaccaaattcgatgttatt 910
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 16707 tttacatgaatactaccaaccctct-aggcaaactccctactaccaaattcgatgttatt 16649
Query: 911 cca 913
|||
Sbjct: 16648 cca 16646
Score = 103 bits (52), Expect = 6e-22
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 586 tgttgttctctggcgttgtaggagcctttctaatgcgccagttattgaaccaatgctaaa 645
|||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct: 178 tgttgttccctggcgttgtaggagcacttctaaggcgccagttattgaaccaatgctaga 119
Query: 646 tacgaagctg-agctgagaggaactaggatca 676
|| ||| ||| |||||||| ||||||||||||
Sbjct: 118 taagaatctgaagctgagacgaactaggatca 87
>3x_Contig1773
Length = 8694
Score = 147 bits (74), Expect = 5e-35
Identities = 93/98 (94%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 639 tgctaaatacgaagctgagctgagaggaactaggatcagcatcaaggctacagcacccag 698
||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 8525 tgctaaataagaagctgagctgagagcaactaggatcagcatcaaggctacagca-ccat 8583
Query: 699 tatttgaacatcagatgtaacaagtatataagtagaag 736
||||||||||||||||||||||||||||||||| ||||
Sbjct: 8584 tatttgaacatcagatgtaacaagtatataagttgaag 8621
>3x_Contig1213
Length = 3226
Score = 137 bits (69), Expect = 4e-32
Identities = 85/89 (95%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 639 tgctaaatacgaagctgagctgagaggaactaggatcagcatcaaggctacagcacccag 698
||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 173 tgctaaataagaagctgagctgagagcaactaggatcagcatcaaggctacagca-ccat 115
Query: 699 tatttgaacatcagatgtaacaagtatat 727
|||||||||||||||||||||||||||||
Sbjct: 114 tatttgaacatcagatgtaacaagtatat 86
>3x_Contig1670
Length = 9382
Score = 125 bits (63), Expect = 2e-28
Identities = 102/112 (91%), Gaps = 6/112 (5%)
Strand = Plus / Minus
Query: 639 tgctaaatacgaagctgagctgagaggaactaggatcagcatcaaggctacagcacccag 698
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 152 tgctaaataagaagctgagctgagaggaactag----agcatcaaggctacagcacc-at 98
Query: 699 tatttgaacatcagatgtaacaagtatataagtagaa-gttccttcatccaa 749
||||||||||||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct: 97 tatttgaacatcagatgtaacaagtctataagtagaaggtttcttcatccaa 46
>3x_Contig1803
Length = 52241
Score = 111 bits (56), Expect = 3e-24
Identities = 84/92 (91%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 586 tgttgttctctggcgttgtaggagcctttctaatgcgccagttattgaaccaatgctaaa 645
|||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 51606 tgttgttccctggcgttgtaggagcacttctaaggcgccagttattgaaccaatgctaaa 51547
Query: 646 tacgaagctg-agctgagaggaactaggatca 676
|| ||||||| ||||| || ||||||||||||
Sbjct: 51546 taagaagctgaagctgggatgaactaggatca 51515
>3x_Contig1701
Length = 10926
Score = 105 bits (53), Expect = 2e-22
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Minus
Query: 585 ctgttgttctctggcgttgtaggagcctttctaatgcgccagttattgaaccaatgctaa 644
|||||||| |||||||||||||||| |||||| ||||||||||||||| |||||||||
Sbjct: 5382 ctgttgttacctggcgttgtaggagcagttctaaggcgccagttattgaaacaatgctaa 5323
Query: 645 atacgaagctg-agctgagaggaactaggatca 676
||| ||||||| |||||||| ||||||||||||
Sbjct: 5322 ataagaagctgaagctgagacgaactaggatca 5290
>3x_Contig1806
Length = 53694
Score = 103 bits (52), Expect = 6e-22
Identities = 64/68 (94%)
Strand = Plus / Minus
Query: 585 ctgttgttctctggcgttgtaggagcctttctaatgcgccagttattgaaccaatgctaa 644
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 41705 ctgttgttctctggcgttgtaggagcatttctaaggcgccagttattgaaccaatgctag 41646
Query: 645 atacgaag 652
||| ||||
Sbjct: 41645 ataagaag 41638
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5995
Number of Sequences: 1807
Number of extensions: 5995
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 9
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)