BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZF02RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1192 1419 0.0
>3x_Contig1192
Length = 5015
Score = 1419 bits (716), Expect = 0.0
Identities = 816/838 (97%), Gaps = 9/838 (1%)
Strand = Plus / Minus
Query: 47 gcttaatgactgtaccgaatttcaaccgacattgagggtaggcaatgtggaacttaatct 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3308 gcttaatgactgtaccgaatttcaaccgacattgagggtaggcaatgtggaacttaatct 3249
Query: 107 caaagacggggggtctggctctattgaagttgataaaccaaagagttcataccatccatt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3248 caaagacggggggtctggctctattgaagttgataaaccaaagagttcataccatccatt 3189
Query: 167 tcacagctatattcaaaatgtgatggagaatgtacaaaattatgactcggatgatgactt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3188 tcacagctatattcaaaatgtgatggagaatgtacaaaattatgactcggatgatgactt 3129
Query: 227 tgatgagaatggaaatgacgttgaacagagttttagtataagttcagattatgaatttga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3128 tgatgagaatggaaatgacgttgaacagagttttagtataagttcagattatgaatttga 3069
Query: 287 atcctcggaggaactaataacaacaggtggtacgatcgaacagtttgatagttcaatgaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3068 atcctcggaggaactaataacaacaggtggtacgatcgaacagtttgatagttcaatgaa 3009
Query: 347 gtcgttaacaattgaagaaattcccgggaaaacaatcactgcatcacttacaacaaaaga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3008 gtcgttaacaattgaagaaattcccgggaaaacaatcactgcatcacttacaacaaaaga 2949
Query: 407 tatatcacaaggaaattctgataatagctctggcgatgaatcatttggattctgtgagga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2948 tatatcacaaggaaattctgataatagctctggcgatgaatcatttggattctgtgagga 2889
Query: 467 tgattttgaaggttcgataggaaaagtgtttgtttccaatattcgaatcggagctgggac 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2888 tgattttgaaggttcgataggaaaagtgtttgtttccaatattcgaatcggagctgggac 2829
Query: 527 tcattcttatcatgtctcatgtcatgaaatatacggagatagtgagcctagatgggtaga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2828 tcattcttatcatgtctcatgtcatgaaatatacggagatagtgagcctagatgggtaga 2769
Query: 587 tgatgaaatgatgaatgaaataattgccgaaatgggcttacctgaacaccgatttagagc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2768 tgatgaaatgatgaatgaaataattgccgaaatgggcttacctgaacaccgatttagagc 2709
Query: 647 tta-tacaaacatctacacaagtcattcattgnagaatgagg-agagccagaggaatatg 704
||| |||||||||||||||||||||||||||| |||| |||| |||||||||||||||||
Sbjct: 2708 ttattacaaacatctacacaagtcattcattgaagaa-gaggaagagccagaggaatatg 2650
Query: 705 ctgatatcccctttgatgatgatgacagtgatgattctactgcggatcaatgcgaacctt 764
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2649 ctgatatcccctttgatgatgatgacagtgatgattctactgcggatcaatgcgaacc-t 2591
Query: 765 ttcggcg-agatgatctcgnggaagatcttgatgatctccggtcttccgccct-aaatac 822
|||| || ||||||||||| |||||||||||||||||| ||||| ||| || ||||||
Sbjct: 2590 ttcgccgaagatgatctcggtgaagatcttgatgatctcgtgtcttacgctctaaaatac 2531
Query: 823 -attagccgcgaaaaatggaatacc-tactacttcattgaat-ttaggggggaaggaa 877
|| ||| ||||||||| ||||||| ||||||||||||| || |||||||| ||||||
Sbjct: 2530 aataagcagcgaaaaattgaataccatactacttcattggatattagggggaaaggaa 2473
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7785
Number of Sequences: 1807
Number of extensions: 7785
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)