BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZF03FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig448 575 e-164
>3x_Contig448
Length = 1249
Score = 575 bits (290), Expect = e-164
Identities = 319/329 (96%), Gaps = 1/329 (0%)
Strand = Plus / Plus
Query: 624 tttccgcttcttggtattatcattgtttgccttaatcacagattcagattttgggaggga 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttccgcttcttggtattatcattgtttgccttaatcacagattcagattttgggaggga 60
Query: 684 agctcgcaggctcacgtatttctctattagctccttattatttaagacgtcctctgcagc 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agctcgcaggctcacgtatttctctattagctccttattatttaagacgtcctctgcagc 120
Query: 744 acgcattcctgctatctttatgtttcttccgacacctctgcccaatactttaccgccagt 803
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 121 acgcattcctgctatctttatgttctttccgacacctctgcccaatactttaccgccagt 180
Query: 804 aatcctgcattccactatggcatttnggtcantagaagttggtttgtgggacagggtagt 863
||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||||||
Sbjct: 181 aatcctgcattccactatggcatttgggtcagtagaggttggtttgt-ggacagggtagt 239
Query: 864 aatggagatttagcgctgcatatccgatcaaagagtaaagggttttctaggcgtttacat 923
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 240 aatggagatttagcgctgcatatccgatcaaagagtaaagggttttcttggcgtttacat 299
Query: 924 caactnctgncgnattttctagtgttatg 952
||||| ||| || ||||||||||||||||
Sbjct: 300 caacttctgtcgtattttctagtgttatg 328
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6329
Number of Sequences: 1807
Number of extensions: 6329
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)