BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZF03RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig551 1431 0.0
>3x_Contig551
Length = 2723
Score = 1431 bits (722), Expect = 0.0
Identities = 874/911 (95%), Gaps = 12/911 (1%)
Strand = Plus / Minus
Query: 48 taagatcgatccaagatccgaacaagccaagatcggtcttgctcaactaaaattgcaaca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2431 taagatcgatccaagatccgaacaagccaagatcggtcttgctcaactaaaattgcaaca 2372
Query: 108 agaagaaattgatgatgccattcaattgttcgaagatgctgccgatctctcaagatcttt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2371 agaagaaattgatgatgccattcaattgttcgaagatgctgccgatctctcaagatcttt 2312
Query: 168 cgatgaaaaactacaagctactactttcgctgaggctaccaaggtccatataaagatcag 227
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 2311 cgatgaaaaactacaagctactactttcgctgaggctaccaaggtccagaaaaagatcag 2252
Query: 228 agctgatccattcattaagggtaagatcgacgaagctattgcagcctaccgtgctcaagg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2251 agctgatccattcattaagggtaagatcgacgaagctattgcagcctaccgtgctcaagg 2192
Query: 288 tctcgcgtaaattagcatgatattcacgaatgaatttaattcatttcaatatgagtaaag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2191 tctcgcgtaaattagcatgatattcacgaatgaatttaattcatttcaatatgagtaaag 2132
Query: 348 ctacaatagctcattgtttttgtctcaccttaatgaccataatggcaacataccatgcaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2131 ctacaatagctcattgtttttgtctcaccttaatgaccataatggcaacataccatgcaa 2072
Query: 408 catctaaacgaatgaattaccaagaaagttatgattttacaaacaaaaagttgtagcatt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2071 catctaaacgaatgaattaccaagaaagttatgattttacaaacaaaaagttgtagcatt 2012
Query: 468 tcacccaagttatttatgactcgtaagcagcgtgaactgtgttaat-cgtaaacgacaag 526
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2011 tcacccaagttatttatgactcgtaagcagcgtgaactgtgttaatgcgtaaacgacaag 1952
Query: 527 atctcaacattacaacgtgaagaataagaaatagttatcaattcttcacaaaaacaagac 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 atctcaacattacaacgtgaagaataagaaatagttatcaattcttcacaaaaacaagac 1892
Query: 587 aaaaagatacacagaagatcaagaatacgagatcaacgcttttcaataacagctcattgc 646
||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1891 aaaaagaaacacagaagaacaagaatacgagaacaacgcttttcaataacagctcattgc 1832
Query: 647 aaaatatgtgctcctaaatacccctggttcataaacatcatcttctaccattttgctaga 706
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1831 aaaatatgtgctcctaaatacccctggttcaaaaacatcatcttctaccattttgctaga 1772
Query: 707 tacaaatacgntctttctgtatatacatgtatctcccccatctcacaa-tttatcaanna 765
||||||||| ||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 1771 aacaaatacg-tctttctgtatatacatgtatctcccccatctcacaagttaatcaaat- 1714
Query: 766 tgta--ttttaacacttcgatagtatatca-ctacatacgtttcaacataaatgacattt 822
|||| ||| |||||||||||||||||| | ||||||||||||||||||||||||| ||
Sbjct: 1713 tgtaattttaaacacttcgatagtatattatttacatacgtttcaacataaatgaca-tt 1655
Query: 823 ttttgttttctctgaaagaagtgtantgtaataaaagtttc-tggggagattatggccag 881
||||||||||||||||||||||||| ||||||||||||||| || | |||||||||| ||
Sbjct: 1654 ttttgttttctctgaaagaagtgta-tgtaataaaagtttcttgtgtagattatggcaag 1596
Query: 882 gtactgagttgaagtgagctacatttc-agtacctcatttgttacggacttttgcagga- 939
||||||||| |||||||||||| ||| ||||| ||||| | ||||||| | ||||||
Sbjct: 1595 gtactgagtgaaagtgagctacaattcaagtacttcattgttaacggactatagcaggat 1536
Query: 940 ttaccccacca 950
|||||||||||
Sbjct: 1535 ttaccccacca 1525
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7773
Number of Sequences: 1807
Number of extensions: 7773
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)