BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZF04FM1.SCF screened BAC_end
         (946 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1285                                                        1411   0.0  

>3x_Contig1285 
          Length = 6175

 Score = 1411 bits (712), Expect = 0.0
 Identities = 758/770 (98%), Gaps = 3/770 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   acccatggtaggttcacgaaggtaaaggttgagagactgcgactgatcaataaagggtgc 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5823 acccatggtaggttcacgaaggtaaaggttgagagactgcgactgatcaataaagggtgc 5764

                                                                        
Query: 146  tctatcactggataaatcaatcattttcctttgagaggtttcccacacggttttgtataa 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5763 tctatcactggataaatcaatcattttcctttgagaggtttcccacacggttttgtataa 5704

                                                                        
Query: 206  attcttcacctcttctggaatcccttctatcgtttgtattgatccattgtctctaagaat 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5703 attcttcacctcttctggaatcccttctatcgtttgtattgatccattgtctctaagaat 5644

                                                                        
Query: 266  acgatttttcaacttttcattccaaattcccaactggcaaaagtcatccaccatgtattg 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5643 acgatttttcaacttttcattccaaattcccaactggcaaaagtcatccaccatgtattg 5584

                                                                        
Query: 326  gttgataattgtaaattcacccgacaagactcttctggagtatatatttgatgtcatagg 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5583 gttgataattgtaaattcacccgacaagactcttctggagtatatatttgatgtcatagg 5524

                                                                        
Query: 386  ttcaaaagattcagtgaatcctaaaatctgggaagtagatgccgttggcattgggccaac 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5523 ttcaaaagattcagtgaatcctaaaatctgggaagtagatgccgttggcattgggccaac 5464

                                                                        
Query: 446  caatagagaattacgcagtcctttacccttggtaatccttgacttcaaagaatcccaatc 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5463 caatagagaattacgcagtcctttacccttggtaatccttgacttcaaagaatcccaatc 5404

                                                                        
Query: 506  atcaaataaaaacttgtagttatctttgttcaatgaccataaatcaaattgaagctggcc 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5403 atcaaataaaaacttgtagttatctttgttcaatgaccataaatcaaattgaagctggcc 5344

                                                                        
Query: 566  ttctgaggcaggagacccaggataactctcataatgaccaaatagttcagctagttctgt 625
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5343 ttctgaggcaggagacccaggaaaactctcataatgaccaaatagttcagctagttctgt 5284

                                                                        
Query: 626  ggaagcctcgatagcagcgtgatatatggtttcaaaaaatctgtttg-ttaaagtcgcgg 684
            ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 5283 ggaagcctcgatagcagcgtgatatatggtttc-aaaaatctgtttgtttaaagtcgcgg 5225

                                                                        
Query: 685  catcaaccgattcaaatggagtacggcagagcatgaatgtgtctgccaacccttgaaccc 744
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5224 catcaaccgattcaaatggagtacggcagagcatgaatgtgtctgccaacccttgaaccc 5165

                                                                        
Query: 745  cnatagccaaaggcctgtttcttatattttcatttctagcctcaagaacaggatattttt 804
            | ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| 
Sbjct: 5164 caatagccaaaggcctgtttcttatatttccatttctagcctcaggaacaggatattttc 5105

                                                              
Query: 805  ccacatcgatagtcctatcttaattttttaacgaggaccttnaccacatg 854
            ||||||||||||||||||| ||| ||||||||||| ||||| || |||||
Sbjct: 5104 ccacatcgatagtcctatc-taaatttttaacgagaaccttaacaacatg 5056


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6851
Number of Sequences: 1807
Number of extensions: 6851
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)