BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZF04RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1804 1308 0.0
>3x_Contig1804
Length = 51183
Score = 1308 bits (660), Expect = 0.0
Identities = 740/760 (97%), Gaps = 6/760 (0%)
Strand = Plus / Minus
Query: 39 aacgttagattcgttagaatattcctttgcagtagtaacacagtcatcgaaacaagtagt 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14383 aacgttagattcgttagaatattcctttgcagtagtaacacagtcatcgaaacaagtagt 14324
Query: 99 catgatcttcttcaattcagcgtcaactgtttctctggtccatgaaactctagcggagtt 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14323 catgatcttcttcaattcagcgtcaactgtttctctggtccatgaaactctagcggagtt 14264
Query: 159 ttgagccatttccaaaccagaaacagcaacaccacccatgttagaagccttacctggagc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14263 ttgagccatttccaaaccagaaacagcaacaccacccatgttagaagccttacctggagc 14204
Query: 219 gtaccagacggcaggagcactagcggaggcagtttgcaaacgaacaccttcgaagacatc 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14203 gtaccagacggcaggagcactagcggaggcagtttgcaaacgaacaccttcgaagacatc 14144
Query: 279 gatggcttcttgagtggaacccatattagaaccttcagcaacgaacttgacaccattggc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14143 gatggcttcttgagtggaacccatattagaaccttcagcaacgaacttgacaccattggc 14084
Query: 339 aaccaagtgttcagcttcagcaccagaaacttcgttttgagtggcacatggcaaagcaac 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14083 aaccaagtgttcagcttcagcaccagaaacttcgttttgagtggcacatggcaaagcaac 14024
Query: 399 atcaaccttacctacgtgaacccatggtctagcaccagcgatgtatttcacagaacttcc 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14023 atcaaccttacctacgtgaacccatggtctagcaccagcgatgtatttcacagaacttcc 13964
Query: 459 agagaagacagaagcttcaccaacgatttgttccaaagtcttccaggctgctctaccatc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13963 agagaagacagaagcttcaccaacgatttgttccaaagtcttccaggctgctctaccatc 13904
Query: 519 ttggatagcgtagatgtgctctgcagtgataccagtttcggagatgacagaacccttaga 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13903 ttggatagcgtagatgtgctctgcagtgataccagtttcggagatgacagaacccttaga 13844
Query: 579 aatcgacatatgac-anacggtagcacccaattcaatacatttcanagcagcatattggg 637
| |||| | ||| | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 13843 atcggaca-aagacaaaacggtagcacccaattcaatacatttcaaagcagcatattggg 13785
Query: 638 catcgttaccggatccggagatgacaacacgcttaccttncgaagatt-cttacctttgg 696
|| |||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||
Sbjct: 13784 caacgttaccggaaccggagatgacaacacgcttaccttcgaaagattccttaccttggg 13725
Query: 697 aagcatacttgatcatagcttcagtgtagtaaatcagaccgtnaccagtagctttctggt 756
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 13724 aagcatacttgatcatagcttcagtgtagtaaatcagaccgtaaccagtagc-ttctggt 13666
Query: 757 ctgatcaaagaaccacccccatttcaagttccttaccggt 796
||||||||||||||| ||||| |||||| |||||||||||
Sbjct: 13665 ctgatcaaagaacca-ccccagttcaag-tccttaccggt 13628
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5829
Number of Sequences: 1807
Number of extensions: 5829
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)