BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZF06FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1705 1528 0.0
>3x_Contig1705
Length = 16734
Score = 1528 bits (771), Expect = 0.0
Identities = 845/862 (98%), Gaps = 6/862 (0%)
Strand = Plus / Plus
Query: 86 ttcgtcagacgaggaaggatttttgtaaatagcaaataacttttcgtaatttttggcatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7934 ttcgtcagacgaggaaggatttttgtaaatagcaaataacttttcgtaatttttggcatt 7993
Query: 146 accgtctctggcaacagtaccgaatacggatgatttaatcaatggtggaatagcgttgct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7994 accgtctctggcaacagtaccgaatacggatgatttaatcaatggtggaatagcgttgct 8053
Query: 206 gtcgccagaagtgtatttctcaaacattttcaaagcggccttaacgacaactggatcctt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8054 gtcgccagaagtgtatttctcaaacattttcaaagcggccttaacgacaactggatcctt 8113
Query: 266 tgctgcagcggaggatgagaacatttcaaccttcaacctttgagacgcgtaagactcgtt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8114 tgctgcagcggaggatgagaacatttcaaccttcaacctttgagacgcgtaagactcgtt 8173
Query: 326 ctctgagaattcccagcccaaagagtgggtcttctctgagaccaattgtctagtaaattc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8174 ctctgagaattcccagcccaaagagtgggtcttctctgagaccaattgtctagtaaattc 8233
Query: 386 atccaaggcttccaaagtttcctttggctcaaaggcccaagcagccttcaaagatcccaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8234 atccaaggcttccaaagtttcctttggctcaaaggcccaagcagccttcaaagatcccaa 8293
Query: 446 actgtttatcatctgctcccagacaacaaaggagtcctcgtttttccattgagaaatcaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8294 actgtttatcatctgctcccagacaacaaaggagtcctcgtttttccattgagaaatcaa 8353
Query: 506 ttgtaagaaatttttggtggaagtataacctgacaaggacaacgtcttacaatcagcaac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8354 ttgtaagaaatttttggtggaagtataacctgacaaggacaacgtcttacaatcagcaac 8413
Query: 566 taaaccagttcggtcttcaacagtcaacaaatcagattgtttggataaagtagtccatct 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8414 taaaccagttcggtcttcaacagtcaacaaatcagattgtttggataaagtagtccatct 8473
Query: 626 atcatcagagtatgaagtgacgtagatacctgcttggtttgcgttagttttgataaagtc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8474 atcatcagagtatgaagtgacgtagatacctgcttggtttgcgttagttttgataaagtc 8533
Query: 686 aacatcctcaacagtaacagttaattctctttcgtccaaagttaacgaatgatcaacacc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8534 aacatcctcaacagtaacagttaattctctttcgtccaaagttaacgaatgatcaacacc 8593
Query: 746 agaattttgtcttt-aagacataaacactggatacaaagttttatcttctttcagcttga 804
|||| ||||||||| |||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 8594 agaa-tttgtctttaaagacaaaaacactggatacaaagttttatcttcttcaggcttga 8652
Query: 805 catcagctgtatttcaagtaaacgttttgctttgaaagtgattttgtgaccatcttcagt 864
||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 8653 catcagctgta-ttcaagtaacggttttgc-ttgaaagtgattttgtgaccatcttcagt 8710
Query: 865 tacagaaacgattgggaaatc-acttttttggtncagatattcataacgttacgaacgtc 923
|||||||||||||||||| | ||||||||||| ||||||| ||||||||||||||||||
Sbjct: 8711 aacagaaacgattgggaaaccaacttttttggtccagatatccataacgttacgaacgtc 8770
Query: 924 ctta-cagatgcttcaaataaa 944
|||| ||||||||||| |||||
Sbjct: 8771 cttaccagatgcttcagataaa 8792
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6679
Number of Sequences: 1807
Number of extensions: 6679
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)