BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZF06RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1730 1473 0.0
>3x_Contig1730
Length = 17223
Score = 1473 bits (743), Expect = 0.0
Identities = 856/877 (97%), Gaps = 15/877 (1%)
Strand = Plus / Plus
Query: 45 gcttgacacagaatggttcattgcaaagtatgggcttttagtgaggaagatttggacgga 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13910 gcttgacacagaatggttcattgcaaagtatgggcttttagtgaggaagatttggacgga 13969
Query: 105 ccaaatatctttcggtgctaaactcgcggaacttctatgtcaacggactaggtcaaaaaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13970 ccaaatatctttcggtgctaaactcgcggaacttctatgtcaacggactaggtcaaaaaa 14029
Query: 165 aagatgtagaagaaacactgcactcgctatttttctagcacaatgtctaaacccatcaca 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14030 aagatgtagaagaaacactgcactcgctatttttctagcacaatgtctaaacccatcaca 14089
Query: 225 atccattgcatttgttttcggaccctgtacagtagcaccaggtaaggttatctcaatgga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14090 atccattgcatttgttttcggaccctgtacagtagcaccaggtaaggttatctcaatgga 14149
Query: 285 ccgaaaaaatcatatcaggcagcatagaaatatagaggaagacaaggatgtgaaatattg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14150 ccgaaaaaatcatatcaggcagcatagaaatatagaggaagacaaggatgtgaaatattg 14209
Query: 345 gaaaccttctagagaattttacaataaaatgagtaagtccttaaagtttgctccatgcac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14210 gaaaccttctagagaattttacaataaaatgagtaagtccttaaagtttgctccatgcac 14269
Query: 405 ggtattcgtcgcatccatggatcaggtcggaatatgggagatgagatcctgtttgaacaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14270 ggtattcgtcgcatccatggatcaggtcggaatatgggagatgagatcctgtttgaacaa 14329
Query: 465 ctttattcaatacgaatccttcaatgatagaaatttcatatatgattggcaggcgtatat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14330 ctttattcaatacgaatccttcaatgatagaaatttcatatatgattggcaggcgtatat 14389
Query: 525 tcaagggaaaggatgttatgaaataaccagaattgttatcaaaacttctaacaagctatt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14390 tcaagggaaaggatgttatgaaataaccagaattgttatcaaaacttctaacaagctatt 14449
Query: 585 actgaatgggatctttggtccagtctcatccttgaaagacaaggacacacatgtatctga 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14450 actgaatgggatctttggtccagtctcatccttgaaagacaaggacacacatgtatctga 14509
Query: 645 cactccaaagggctttggagggtctggaaccttccgttac-aatggccaagtagtaatct 703
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 14510 cactccaaagggctttggagggtctggaaccttccgttacaaagggccaagtagtaatct 14569
Query: 704 accatcaattttgataagtttatctggtgatacatctcgcagcgctgctgaagcccttgc 763
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 14570 accatcaattttgataagtttatctgttgatacatctcgcagcgctgctgaag-ccttgc 14628
Query: 764 -agaaatgccagataa--tttcctttttaatggaatgctactat-aacacttgaatca-- 817
||||||||||||||| |||||||| |||||||||||||||| |||||||||||||
Sbjct: 14629 aagaaatgccagataaattttcctttcaaatggaatgctactataaacacttgaatcaag 14688
Query: 818 gatacgtttctgtag-aacgaaa-ttatt-ccagtac-accttaccagttgaacatcttt 873
|||||||||||||| ||||||| ||||| ||||||| |||||||||| |||||||||||
Sbjct: 14689 aatacgtttctgtagaaacgaaatttattcccagtacaaccttaccaggtgaacatcttt 14748
Query: 874 t-acccaaaattt-cactgggatat-atggctggatc 907
| ||||||||||| ||||||||||| |||||||||||
Sbjct: 14749 taacccaaaatttccactgggatataatggctggatc 14785
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7104
Number of Sequences: 1807
Number of extensions: 7104
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)