BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZF07FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1665 1405 0.0
>3x_Contig1665
Length = 15710
Score = 1405 bits (709), Expect = 0.0
Identities = 768/784 (97%), Gaps = 3/784 (0%)
Strand = Plus / Minus
Query: 86 ccatctgtggaacacgaaattgatgcataatgttgattatgaaattatgaagaagggtgt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8688 ccatctgtggaacacgaaattgatgcataatgttgattatgaaattatgaagaagggtgt 8629
Query: 146 atttagcgatgatgttatagaggatgaattggactttcaggacgtcttagatgagaatga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8628 atttagcgatgatgttatagaggatgaattggactttcaggacgtcttagatgagaatga 8569
Query: 206 ccttctggacgttttaaaggttgatgatttggatcaagatatggaacttgccatggatat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8568 ccttctggacgttttaaaggttgatgatttggatcaagatatggaacttgccatggatat 8509
Query: 266 tagtaatgaggatgcgttgagcgtagatgaggaaggg-gatattatgggagaagaggagg 324
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 8508 tagtaatgaggatgcgttgagcgtagatgaggaagggagatattatgggagaagaggagg 8449
Query: 325 aagcagcactcatagaagatcctgaaatattcgacaccatcggtgccgtatatggacttg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8448 aagcagcactcatagaagatcctgaaatattcgacaccatcggtgccgtatatggacttg 8389
Query: 385 ataccgtttcgttatcttcaaatgcctccgtatcttcttcctcatcttctacttcgtcat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8388 ataccgtttcgttatcttcaaatgcctccgtatcttcttcctcatcttctacttcgtcat 8329
Query: 445 cgatttcagaaacaccttcgatatcatctctgtattctgttgaaaagggtatggatgaaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8328 cgatttcagaaacaccttcgatatcatctctgtattctgttgaaaagggtatggatgaaa 8269
Query: 505 acctagcctcgttgaacgagtttcatatttacaatggtttcgattctactccatcattcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8268 acctagcctcgttgaacgagtttcatatttacaatggtttcgattctactccatcattcc 8209
Query: 565 ctcgtgaatatagtacgccgaacgaatcatctgcatcattgactcaagatcaagatggct 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8208 ctcgtgaatatagtacgccgaacgaatcatctgcatcattgactcaagatcaagatggct 8149
Query: 625 tcagggatgaagatgataaaaagttactaagtagaagaaggaaacgaataccanaaagaa 684
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8148 tcagggatgaagatgataaaaagttactaagtagaagaaggaaacgaataccaaaaagaa 8089
Query: 685 aaagatctatccatagttttgaagtatcaaagagagaacattcattgggtgtagtagtta 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8088 aaagatctatccatagttttgaagtatcaaagagagaacattcattgggtgtagtagtta 8029
Query: 745 tgacccttgagagtattacaaaccttccattggttaag-aggaaatgtcaaaaacaggct 803
||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 8028 tgaccttgaagagtattacaaaccttccattggttaagaagaaaatgtcaaaaacaggct 7969
Query: 804 atgatttggatcccgtcgttattattacattgggtaagagaaatgtttaaaagcttttac 863
||||| ||||||| ||||||| |||||||| |||| ||| | |||||||||||| ||||
Sbjct: 7968 atgatatggatccgttcgttataattacatttggtaggag-agtgtttaaaagctcttac 7910
Query: 864 aaga 867
||||
Sbjct: 7909 aaga 7906
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8456
Number of Sequences: 1807
Number of extensions: 8456
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)