BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZF08RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1319 1548 0.0
>3x_Contig1319
Length = 7600
Score = 1548 bits (781), Expect = 0.0
Identities = 865/886 (97%), Gaps = 7/886 (0%)
Strand = Plus / Minus
Query: 43 gctttaagggtacaaacagaacatgaatacaaattaaacaacaaatggaaatctctggta 102
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1550 gctttaagggtacaaacagaacaagaatacaaattaaacaacaaatggaaatctctggta 1491
Query: 103 aaatgcatgagggtgacagtctagtggtaagtcctaaatcattagatgagctaccgataa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 aaatgcatgagggtgacagtctagtggtaagtcctaaatcattagatgagctaccgataa 1431
Query: 163 acgttatattccagatactatcagagctcaaattctctgatttaaagaatgtgtcatcca 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1430 acgttatattccagatactatcagagctcaaattctctgatttaaagaatgtgtcagcca 1371
Query: 223 catgctggacgttaagaattcttacgaatgaaaaattaatgtactatagtatacttcatg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 catgctggacgttaagaattcttacgaatgaaaaattaatgtactatagtatacttcatg 1311
Query: 283 acccaaagaatcaatatttatggacgaaaagatactttttagattcgctaaggatgttac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 acccaaagaatcaatatttatggacgaaaagatactttttagattcgctaaggatgttac 1251
Query: 343 aaaggaatagacgaggtttcgattttgtatctttgaatgacacaacattctttcaatccc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 aaaggaatagacgaggtttcgattttgtatctttgaatgacacaacattctttcaatccc 1191
Query: 403 tgcgatatctgcataatggagtaaggaaggtctcagggaacctcttgagactgttagaat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 tgcgatatctgcataatggagtaaggaaggtctcagggaacctcttgagactgttagaat 1131
Query: 463 caaatgatgatttagggataaacgaaatagacactgcatcggaaagtgaagacaatgaca 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 caaatgatgatttagggataaacgaaatagacactgcatcggaaagtgaagacaatgaca 1071
Query: 523 atatgaacaacgatgaaaatgataatgaaagtaatggatatgatagccagaaccagcgag 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 atatgaacaacgatgaaaatgataatgaaagtaatggatatgatagccagaaccagcgag 1011
Query: 583 taggaaaaaaatacattaatgacgggagaactgatggtgaaatgatgcccgacaactcag 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 taggaaaaaaatacattaatgacgggagaactgatggtgaaatgatgcccgacaactcag 951
Query: 643 atctctgggaaactgaagatgagtcggatattgacacaactaatgacgttaatggattgg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 atctctgggaaactgaagatgagtcggatattgacacaactaatgacgttaatggattgg 891
Query: 703 accaaatatacgctngaaatatatcagtttttggaggaggatactgggagtgatagttat 762
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 890 accaaatatacgctgaaaatatatcagttttt-gaggaggatactgggagtgatagttat 832
Query: 763 aatgatggtcaaatttcaccggtgc-aatatctatgaatggacttgctgatagtgaaagt 821
||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct: 831 aatgatggtcaaattcaaccggtgcaaatatctatgaatgactttgctgatagtgaaagt 772
Query: 822 acgcctactaataag-cacgcacttagccgncaaagatcgattaggaaggattgaaatac 880
||||||||||| ||| |||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 771 acgcctactaaaaagccacgcactaagccgacaaagatcgataaggaaggattgaaatac 712
Query: 881 ttgagaagttttggaagggctttcataggaattgggtgtaatttct 926
||||| |||||||||| ||||||||||||| | ||||||||||||
Sbjct: 711 ttgag-agttttggaa-ggctttcatagga--ttggtgtaatttct 670
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7185
Number of Sequences: 1807
Number of extensions: 7185
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)