BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZF09FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1190 1168 0.0
3x_Contig1410 139 1e-32
>3x_Contig1190
Length = 5329
Score = 1168 bits (589), Expect = 0.0
Identities = 600/604 (99%)
Strand = Plus / Plus
Query: 88 agagttcgacactagaatactagataaggttattgaatacatggaatactcgtataagta 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4726 agagttcgacactagaatactagataaggttattgaatacatggaatactcgtataagta 4785
Query: 148 caaggatgctgatgacgacgttgaagttcctgagttcaacgtttctcctgatatttcgtt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4786 caaggatgctgatgacgacgttgaagttcctgagttcaacgtttctcctgatatttcgtt 4845
Query: 208 agatttattattagctgctgattatttgggtatatgatgcgatactaaaggctagataga 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4846 agatttattattagctgctgattatttgggtatatgatgcgatactaaaggctagataga 4905
Query: 268 acaaaacacagggttgaaatgtgataatagtcatggcaatttcataaagctcactctctt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4906 acaaaacacagggttgaaatgtgataatagtcatggcaatttcataaagctcactctctt 4965
Query: 328 tgttttcaccttagtcgacatcactggacaataaggacatttgaaattacaagtcccgtt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4966 tgttttcaccttagtcgacatcactggacaataaggacatttgaaattacaagtcccgtt 5025
Query: 388 cttgcttaatttatccagacttttcttggaaagaacgtgatgacagggcaaagaataagg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5026 cttgcttaatttatccagacttttcttggaaagaacgtgatgacagggcaaagaataagg 5085
Query: 448 tgggttttccttcgtagtctcttctttcaataccggacatatgaatatagggtgatagtt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5086 tgggttttccttcgtagtctcttctttcaataccggacatatgaatatagggtgatagtt 5145
Query: 508 cgacaagaagggtggcagcttgacgtgaaacggtaattcatcagcagtggaccagtccac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5146 cgacaagaagggtggcagcttgacgtgaaacggtaattcatcagcagtggaccagtccac 5205
Query: 568 atgagatactttcctaatggcttcatatttagtgaacacttggaaaccgantaccccact 627
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5206 atgagatactttcctaatggcttcatatttagtgaacacttggaaaccgataaccccact 5265
Query: 628 tagcacgatcaggaataacgctgaatgtaaaggaagtttgttctgtagacaatactgttt 687
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5266 tagcacgacaaggaataacgctgaatgtaaaggaagtttgttctgtagacaatactgttt 5325
Query: 688 cgtg 691
||||
Sbjct: 5326 cgtg 5329
>3x_Contig1410
Length = 7640
Score = 139 bits (70), Expect = 1e-32
Identities = 107/114 (93%), Gaps = 4/114 (3%)
Strand = Plus / Minus
Query: 804 tttactcactgtcgacgccaagttcgtctgtatatac-agtagcacttcatagttttatt 862
||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct: 7626 tttactcactgtcgacgccaagttcgtctgtatatacaagtagcactccataggtttatt 7567
Query: 863 ttcagac-acaatgac-tcgcgtttaggtaaggtaa-tggaaatgaagtacttc 913
||||||| |||||||| |||||||||||||| |||| |||||||||||||||||
Sbjct: 7566 ttcagacaacaatgacatcgcgtttaggtaatgtaattggaaatgaagtacttc 7513
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5774
Number of Sequences: 1807
Number of extensions: 5774
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 2
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)