BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZF09RM1.SCF screened BAC_end
         (935 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig897                                                         1364   0.0  

>3x_Contig897 
          Length = 3942

 Score = 1364 bits (688), Expect = 0.0
 Identities = 788/814 (96%), Gaps = 6/814 (0%)
 Strand = Plus / Minus

                                                                        
Query: 42   cttttctctctgtgtattcgcactctcctcctgttagctaagagaatataaaaggtgatt 101
            ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3884 cttttctctctttttattcgcactctcctcctgttagctaagagaatataaaaggtgatt 3825

                                                                        
Query: 102  tgctatttgatcttaccaaatacatacttaacttatatatacatatatataggcacgtta 161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3824 tgctatttgatcttaccaaatacatacttaacttatatatacatatatataggcacgtta 3765

                                                                        
Query: 162  ttatccaagtgaagtaaaattagaatttatgaaatataatacattaatgacaccacatgc 221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3764 ttatccaagtgaagtaaaattagaatttatgaaatataatacattaatgacaccacatgc 3705

                                                                        
Query: 222  cagcggaaatcacctcctctatctctgataaggaaatctgcttgaggaacaaggtgagat 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3704 cagcggaaatcacctcctctatctctgataaggaaatctgcttgaggaacaaggtgagat 3645

                                                                        
Query: 282  ttcctttcgcaaaaagataggcatgctgtctccacggcactgtggaaatttccattacaa 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3644 ttcctttcgcaaaaagataggcatgctgtctccacggcactgtggaaatttccattacaa 3585

                                                                        
Query: 342  aaatgaacggataaccaaaattgaatcatctttaggctgaaccctttcagcccattaatt 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3584 aaatgaacggataaccaaaattgaatcatctttaggctgaaccctttcagcccattaatt 3525

                                                                        
Query: 402  ctgattgcacgtgcttcggcaaatgtcaatggtcatataggaattttattaatttggtgt 461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3524 ctgattgcacgtgcttcggcaaatgtcaatggtcatataggaattttattaatttggtgt 3465

                                                                        
Query: 462  aattaatatcaatcctgcgctgcaacgatttctggcattcctcacagccgcatgttgagg 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3464 aattaatatcaatcctgcgctgcaacgatttctggcattcctcacagccgcatgttgagg 3405

                                                                        
Query: 522  cagcacgcacgggttctctcaattttttattatttttttaaattggatttggccacgatg 581
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3404 cagcacgcacgggttctctcaattttttattatttttttaaattggatttggccacgagg 3345

                                                                        
Query: 582  gcatggtcagtagccatgctcggggtaatcttaaatttgacatttattccagaaggaaaa 641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3344 gcatggtcagtagccatgctcggggtaatcttaaatttgacatttattccagaaggaaaa 3285

                                                                        
Query: 642  aaaaacataatgcacatctgtcgcatattcgggtaatggtaaagatgcttaacgaaattt 701
            ||||||| || |||||||||||||| || |||||||||||||||| ||||||||||||||
Sbjct: 3284 aaaaacaaaaggcacatctgtcgcaaatccgggtaatggtaaagaggcttaacgaaattt 3225

                                                                        
Query: 702  ttccgtgatatacacaaagatacctattaaaatggcattttactggaaacaatag-aaag 760
            |||||||||||||||||||||||||||||||| |||||||||||||||  ||||| ||||
Sbjct: 3224 ttccgtgatatacacaaagatacctattaaaagggcattttactggaacaaatagaaaag 3165

                                                                        
Query: 761  ctgat-aacatgncagaaagg-agcaatcctcctggttg-aatcangtcttacaaccgga 817
            ||||| ||||||  ||||||| ||||||||||||||||| ||||| ||||||  ||||||
Sbjct: 3164 ctgataaacatgcaagaaaggaagcaatcctcctggttgaaatcaggtcttaacaccgga 3105

                                              
Query: 818  -cacaatttccg-tatattacgaattttcatttt 849
             ||||||| ||| |||||  || |||||||||||
Sbjct: 3104 gcacaattcccgatatataccgtattttcatttt 3071


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8363
Number of Sequences: 1807
Number of extensions: 8363
Number of successful extensions: 148
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)