BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZF10FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig440 543 e-154
3x_Contig1103 440 e-123
>3x_Contig440
Length = 1389
Score = 543 bits (274), Expect = e-154
Identities = 381/413 (92%), Gaps = 3/413 (0%)
Strand = Plus / Minus
Query: 401 tatatatattctctttttagtgaagtatcccgatttcatagtaggatttcgtcgtcagaa 460
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1386 tatatatattctgtttttagtgaagtatcccgatttcatagtaggatttcgtcgtcagaa 1327
Query: 461 tcttcgtcattaacaggaagattaatagttttttcctcgaatccaacccattcacctcca 520
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1326 tcttcgtcattaacaggaagattaatagttttt-cctcgaatccaacccattcacctcca 1268
Query: 521 tctaaatcgtcgtccatgttgatatcctctttgtcttcagattcgttgtctgaatcattg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 tctaaatcgtcgtccatgttgatatcctctttgtcttcagattcgttgtctgaatcattg 1208
Query: 581 cccagtagattcatattctcgtcaacagcgttagttgaagaaccatcggtatttgtcaaa 640
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 cccagtagattcatatcctcgtcaacagcgttagttgaagaaccatcggtatttgtcaaa 1148
Query: 641 aagnctaatgtgtacttatttctcttggatgtttggacgacgtcattttgccttcttccc 700
||| ||||||||||||||||||||||| ||||||||||||||||| |||||| | | ||
Sbjct: 1147 aagtctaatgtgtacttatttctcttgtatgtttggacgacgtca-tttgccattctacc 1089
Query: 701 aataaacttttgaacagctctaattggccttaaaaattgatgctaattaagtgaaatgtt 760
|||||| |||| |||||||| | || || | |||||||||| |||| |||||| |
Sbjct: 1088 aataaatctttggacagctctcaatgcgctagagaattgatgcttattagtagaaatg-t 1030
Query: 761 ttttgccgggggctgtaagtccacatttgttccaaaggaaattgaaccccaaa 813
||||||| ||||||||||| || ||||| ||||||||| ||||||| |||||
Sbjct: 1029 atttgccgtgggctgtaagtacagatttgatccaaaggagattgaactccaaa 977
>3x_Contig1103
Length = 3850
Score = 440 bits (222), Expect = e-123
Identities = 222/222 (100%)
Strand = Plus / Minus
Query: 87 gaccacctaatttcagacatgtatgtttaaagcgcttttatgaacagtagagcgcaatgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gaccacctaatttcagacatgtatgtttaaagcgcttttatgaacagtagagcgcaatgt 167
Query: 147 cacgctttgtaccgcaatttctctattttgaatattcttcatctcatctgatctcatctc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 cacgctttgtaccgcaatttctctattttgaatattcttcatctcatctgatctcatctc 107
Query: 207 atctcaaaactgttcctgaattataaggtttttaacaattttgaatttttaatatgcatg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 atctcaaaactgttcctgaattataaggtttttaacaattttgaatttttaatatgcatg 47
Query: 267 taacttatcagattaagaggcaataacgtaagttaaaaacgg 308
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 taacttatcagattaagaggcaataacgtaagttaaaaacgg 5
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8212
Number of Sequences: 1807
Number of extensions: 8212
Number of successful extensions: 394
Number of sequences better than 1.0e-20: 2
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)