BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZF10RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1155 1263 0.0
>3x_Contig1155
Length = 6106
Score = 1263 bits (637), Expect = 0.0
Identities = 729/747 (97%), Gaps = 10/747 (1%)
Strand = Plus / Plus
Query: 48 ctttttcttttgtttcgggattcctgttgggttacttttcgcattggctctctggtgacg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4714 ctttttcttttgtttcgggattcctgttgggttacttttcgcattggctctctggtgacg 4773
Query: 108 agtgtcagttactccatgcactgttctttttttttggctgttacttttgtatggtaatca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4774 agtgtcagttactccatgcactgttctttttttttggctgttacttttgtatggtaatca 4833
Query: 168 tctatgcttctgatctgtgtcatatcatatcatgtattcctatcagtcctcatttgtctc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4834 tctatgcttctgatctgtgtcatatcatatcatgtattcctatcagtcctcatttgtctc 4893
Query: 228 tcttttcttttagttggtttcactatgtgccaaattatcaaagaccctaatatgaggtat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4894 tcttttcttttagttggtttcactatgtgccaaattatcaaagaccctaatatgaggtat 4953
Query: 288 cttgtaactggtggtacgcatttttgtcctttctatcgtgactacttgaacttcttgtct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4954 cttgtaactggtggtacgcatttttgtcctttctatcgtgactacttgaacttcttgtct 5013
Query: 348 attgtctattgtctattatctaatttatgtatatactgggtattggaataagaaacggga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5014 attgtctattgtctattatctaatttatgtatatactgggtattggaataagaaacggga 5073
Query: 408 cgtttgattcagaaacaaaatatataaaggccatcgaatcatggttaatttgaattcaag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5074 cgtttgattcagaaacaaaatatataaaggccatcgaatcatggttaatttgaattcaag 5133
Query: 468 agtcatcataaactttgtagtatatccctattctactacaaattgtatattctaaaagaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5134 agtcatcataaactttgtagtatatccctattctactacaaattgtatattctaaaagaa 5193
Query: 528 cattcaac-accaaattcattaagaattaccattattatagaanaaatgtctgctgctac 586
|| ||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 5194 ca-tcaacaaccaaattcattaagaattacaattattatagaaaaaatgtctgctgctac 5252
Query: 587 cgnctcttacactgctcaacaacctatctctctaagagtcaacgctgctttgttcgacgt 646
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5253 cgcctctaacactgctcaacaacctatctctctaagagtcaacgctgctttgttcgacgt 5312
Query: 647 tgatggtactttgatcatctctcacccagctattgctgaatttctggagagattttcggt 706
|||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||
Sbjct: 5313 tgatggtactttgatcatctctcaaccagctattgctgaa-ttctggagaga-tttcggt 5370
Query: 707 aaggacaagcccttacttcgactcccaacatgttatccgatttctcttaccggatgggag 766
||||||||| ||||||||||||||||||||||| || |||| ||||| | ||||| ||||
Sbjct: 5371 aaggacaag-ccttacttcgactcccaacatgtcat-cgatatctctca-cggat-ggag 5426
Query: 767 aacataacgatgttatccaagcagttc 793
||||| |||||||||| ||||||||||
Sbjct: 5427 aacat-acgatgttat-caagcagttc 5451
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7905
Number of Sequences: 1807
Number of extensions: 7905
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)