BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZF11RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig351 1191 0.0
>3x_Contig351
Length = 1152
Score = 1191 bits (601), Expect = 0.0
Identities = 604/605 (99%)
Strand = Plus / Plus
Query: 48 ctagtcgtacgtgggaagagtgacatcttaaaagaagctcaacaaaatgcaatcacgtta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctagtcgtacgtgggaagagtgacatcttaaaagaagctcaacaaaatgcaatcacgtta 607
Query: 108 ttctgctgcttattgcgttctcgtctagctacacgtagggtgattgaagaatacagattg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttctgctgcttattgcgttctcgtctagctacacgtagggtgattgaagaatacagattg 667
Query: 168 aacagacagacctttgattgggtgctaaacaatatcgaagcacaattcctaagatctatt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aacagacagacctttgattgggtgctaaacaatatcgaagcacaattcctaagatctatt 727
Query: 228 gttcatccaggtgaaatggttggtgttttggctgctcaatccatcggtgagcctgccact 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gttcatccaggtgaaatggttggtgttttggctgctcaatccatcggtgagcctgccact 787
Query: 288 cagatgacattgaatactttccatttcgctggtgtggcctccaagaaggttacttcaggt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 cagatgacattgaatactttccatttcgctggtgtggcctccaagaaggttacttcaggt 847
Query: 348 gttcctcgtttaaaggaaattttaaatgtcgccaaaaatatgaagaccccgtctcttact 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gttcctcgtttaaaggaaattttaaatgtcgccaaaaatatgaagaccccgtctcttact 907
Query: 408 gtgtatttagatccagagtacgctgctgaccaagagaaggctaaagaaatccgttcagct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 gtgtatttagatccagagtacgctgctgaccaagagaaggctaaagaaatccgttcagct 967
Query: 468 attgaacacacaactttaaagagtgtcaccgtcgcatctgaaatttattatgacccagac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 attgaacacacaactttaaagagtgtcaccgtcgcatctgaaatttattatgacccagac 1027
Query: 528 cctcggtcgactgtcattgaagatgatgaggaaattattcagttacacttctccttgatg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 cctcggtcgactgtcattgaagatgatgaggaaattattcagttacacttctccttgatg 1087
Query: 588 gatgatgaaacagaaaaatctctagattatcaatctccatggttattacgtctagaactt 647
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 gatgaggaaacagaaaaatctctagattatcaatctccatggttattacgtctagaactt 1147
Query: 648 gatcg 652
|||||
Sbjct: 1148 gatcg 1152
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6588
Number of Sequences: 1807
Number of extensions: 6588
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)