BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZF12FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1009 0.0
>3x_Contig1786
Length = 33838
Score = 1009 bits (509), Expect = 0.0
Identities = 595/620 (95%), Gaps = 3/620 (0%)
Strand = Plus / Plus
Query: 88 taataactttgctgtagtcgacatccgatgcattttggttaaattcgtcatcataaccag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 taataactttgctgtagtcgacatccgatgcattttggttaaattcgtcatcataaccag 1680
Query: 148 tgagaaaaatgtttccgggtttcaaatctctatgtattacgacgtatcctttcgatttta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 tgagaaaaatgtttccgggtttcaaatctctatgtattacgacgtatcctttcgatttta 1740
Query: 208 acggttcttccatggcatcatatatcgtttgtagcttagataaatctcttccataatgac 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 acggttcttccatggcatcatatatcgtttgtagcttagataaatctcttccataatgac 1800
Query: 268 acttgaataaagccattaaaatttgaaccataatacgccagacgtattcttcggggacat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 acttgaataaagccattaaaatttgaaccataatacgccagacgtattcttcggggacat 1860
Query: 328 acttccgttggtgtttgtaatatctgatcatctgggacaggtcacctttggaacaatact 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 acttccgttggtgtttgtaatatctgatcatctgggacaggtcacctttggaacaatact 1920
Query: 388 ccatatacaaaaataatgtattcgacttcgcatcatgatcccaatggaaaaactccacga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 ccatatacaaaaataatgtattcgacttcgcatcatgatcccaatggaaaaactccacga 1980
Query: 448 tattgtcatgtttcaattgagataggattgcacattctgatattagttgttgacgttctt 507
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1981 tattgtcatgtttcaattgagaaaggattgcacattctgatattagttgttgacgttctt 2040
Query: 508 tcgcattcatatgaccatatcttactttcttttcgcaacattatcctttatgtccgcttc 567
||||||||||||||||||||||||| |||||| |||| ||||| |||| ||||||||||
Sbjct: 2041 tcgcattcatatgaccatatcttac-ttctttccgcaccatta-ccttattgtccgcttc 2098
Query: 568 tcttactactttttctaacagatccgaaagaccctctttcgattttcctcagcaaacgat 627
||||||||| |||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct: 2099 tcttactac-ttttctaacagatccgaaagaccctcttccgatttcctccagcaaacgat 2157
Query: 628 attggagctgcctcttatttcgattcattatgggnttagctcaattcctttattattaat 687
|| |||| |||| ||||||||||||||| || |||||||||| ||| | ||||||
Sbjct: 2158 atgtaggctgtctctcatttcgattcattattgggttagctcaatggcttattaattaat 2217
Query: 688 ttccaatgttgggaataccc 707
||||||||||||||||||||
Sbjct: 2218 ttccaatgttgggaataccc 2237
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8139
Number of Sequences: 1807
Number of extensions: 8139
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)