BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZF12RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig373 1388 0.0
>3x_Contig373
Length = 2255
Score = 1388 bits (700), Expect = 0.0
Identities = 857/899 (95%), Gaps = 8/899 (0%)
Strand = Plus / Minus
Query: 47 gcttttcatactcgtcaccgattaatgtcttataattaacgttcaaaatgtcataagttt 106
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1854 gcttttcatactcgtcaccgattaatgtcttagaattaacgttcaaaatgtcataagttt 1795
Query: 107 cgtatcagtacatatgatgccaataattagttcaattttttgattgccataaagtagttt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1794 cgtatcagtacatatgatgccaataattagttcaattttttgattgccataaagtagttt 1735
Query: 167 ccgatgttagtgcagtcgtgttccacccaaccggtcaaaggtagatacatggttccttta 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1734 ccgatgttagtgcagtcgtgttccacccaaccggtcaaaggtagatacatggttccttta 1675
Query: 227 gtgtctaaaatttcatatcttccttgtacattatcttcaaaccattgtttgatctctgat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1674 gtgtctaaaatttcatatcttccttgtacattatcttcaaaccattgtttgatctctgat 1615
Query: 287 gagttgatgtacttttcaacgtgatgagttccttttggaactacttttaatatctgctct 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1614 gagttgatgtacttttcaacgtgatgagttccttttggaactacttttaatatctgctct 1555
Query: 347 cccatgaatatggtggtaaaccatgagattgggtctctgtttatagtgcttaagaagata 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 cccatgaatatggtggtaaaccatgagattgggtctctgtttatagtgcttaagaagata 1495
Query: 407 actccattgggtttcaatttactccaagcttgacgtaatatttcacttggttcatcaaca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 actccattgggtttcaatttactccaagcttgacgtaatatttcacttggttcatcaaca 1435
Query: 467 tgctccaacatttcaaacattgtcacaatatcatagtggccatgaaccttctccaaaggc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1434 tgctccaacatttcaaacattgtcacaatatcatagtggccatgaaccttctccaaaggc 1375
Query: 527 aagaacttatagaatattttatcctttatcgaatgatcctttgctgcatgtgccttatcc 586
|||| || |||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 1374 aagattttttagaatattttatcctttatcgaaggatcctttgctgcatgtgccttagcc 1315
Query: 587 acctcaatacattctggagtcaaatcaattgctgtgacactttgaatgaatggcatcctg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1314 acctcaatacattctggagtcaaatcaattgctgtgacactttgaatgaatggcaacctg 1255
Query: 647 gcataagactctgatcatatacactccccacatccaatgtcaatggcatcgaattttttt 706
||| |||||||||| |||||| ||||||| |||||||||| ||||||||||||||||
Sbjct: 1254 gcaaaagactctgacaatatacctcccccacagccaatgtcaagggcatcgaattttttt 1195
Query: 707 ttacccaatccacgttgcacttcatt-aaaatatcctggtcaa-tgcctt-gttacgtaa 763
| ||||||||| || ||||||||||| |||||||||||||||| |||||| || ||||||
Sbjct: 1194 tcacccaatcctcg-tgcacttcattaaaaatatcctggtcaattgccttggtaacgtaa 1136
Query: 764 cctggtaaatgatcatgatgatttgatcccggnatgtacacatcatcatttcttgatctt 823
||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||
Sbjct: 1135 cctggtaaatgatcatgatgattgaatcccgggatgtacacatcatca-ttcttgatctt 1077
Query: 824 tattcgattccctacccgttctttgcaaaaaatcagccctagctaaactcatccttatgc 883
|||| |||| ||| |||||||||||||||||||| |||||||||| |||| |||||||
Sbjct: 1076 tatttgatt-tctaaccgttctttgcaaaaaatcaagcctagctaaattcat-cttatgc 1019
Query: 884 -aaatcctctgaaattccccagtttccaaccatgttggggcaagctgctgaaaaagaaa 941
||||||||||| || ||| ||| ||| |||||||||| ||||||||||||||| ||||
Sbjct: 1018 aaaatcctctgagatccccaagtatcccaccatgttggtgcaagctgctgaaaatgaaa 960
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8356
Number of Sequences: 1807
Number of extensions: 8356
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)