BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG01FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig763 1522 0.0
>3x_Contig763
Length = 2933
Score = 1522 bits (768), Expect = 0.0
Identities = 809/822 (98%), Gaps = 1/822 (0%)
Strand = Plus / Minus
Query: 86 ttgattgatcaccctttttgattttccttatgctaattgttcttaaatagttttgtattt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2625 ttgattgatcaccctttttgattttccttatgctaattgttcttaaatagttttgtattt 2566
Query: 146 gtattcatatttgtgtattcatattacgacaaatttagttcgagatcttcaatagcagaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2565 gtattcatatttgtgtattcatattacgacaaatttagttcgagatcttcaatagcagaa 2506
Query: 206 aatattgacaaacttatgaagtgacgaggaaatgttactattttgtctaactaaactaaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2505 aatattgacaaacttatgaagtgacgaggaaatgttactattttgtctaactaaactaaa 2446
Query: 266 gtgattattaagaaatgtgagtgtataaaaagagttcatgaagatgaacaggatagacct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2445 gtgattattaagaaatgtgagtgtataaaaagagttcatgaagatgaacaggatagacct 2386
Query: 326 gtcgataacagtcaacttgagagacctgaaaaatctgaaaaaatgatagactagaaatag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2385 gtcgataacagtcaacttgagagacctgaaaaatctgaaaaaatgatagactagaaatag 2326
Query: 386 aaaagaggacaattcttgttttaaaattgagaatgttaataatatgatatgattattatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2325 aaaagaggacaattcttgttttaaaattgagaatgttaataatatgatatgattattatg 2266
Query: 446 atagtaatgcattagacttgattactgaagtttgccaacgaatgtcttagctccatctgt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2265 atagtaatgcattagacttgattactgaagtttgccaacgaatgtcttagctccatctgt 2206
Query: 506 ttctcagagggggaaaaaaggctaaccaaaaaaaaagtatctattgtagacaagtttcac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2205 ttctcagagggggaaaaaaggctaaccaaaaaaaaagtatctattgtagacaagtttcac 2146
Query: 566 tgttgcactgagcattttcgtcaatggtacatccagtcaagtttgtagttgagccataga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2145 tgttgcactgagcattttcgtcaatggtacatccagtcaagtttgtagttgagccataga 2086
Query: 626 caccaccaccggcaattctgctgaatcgacgggcgatatcttcagtgactgcacctgatc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2085 caccaccaccggcaattctgctgaatcgacgggcgatatcttcagtgactgcacctgatc 2026
Query: 686 caacgaattctggttgtacagtagcagagtgaataccatatctgtggaagatggacccta 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2025 caacgaattctggttgtacagtagcagagtgaataccatatctgtggaagatggacctaa 1966
Query: 746 taactngngcaatgttcataaattcttcaagtttagattgaatttc-acgtggacagatg 804
||||| | ||||||||||||||||||||| | |||||||||||||| |||||||||||||
Sbjct: 1965 taacttgggcaatgttcataaattcttcagggttagattgaatttcaacgtggacagatg 1906
Query: 805 cgatgtatagggattcggtcaagtttcagatatggaagtcatgaactgatacgacacccg 864
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1905 cgatgtatagggattcggtcaagttccagatatggaagtcatgaactgatacgacacccg 1846
Query: 865 gtgaagataaattgtcatgcttaacatccgcagcagaaacgt 906
|| ||||||| |||||||||||||||| ||||||||||||
Sbjct: 1845 gtagagataaaatgtcatgcttaacatcgtcagcagaaacgt 1804
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7431
Number of Sequences: 1807
Number of extensions: 7431
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)