BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZG01RM1.SCF screened BAC_end
         (909 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1640                                                        1431   0.0  

>3x_Contig1640 
          Length = 15521

 Score = 1431 bits (722), Expect = 0.0
 Identities = 836/867 (96%), Gaps = 6/867 (0%)
 Strand = Plus / Plus

                                                                        
Query: 47   aacgttgagttgaatctagagaaagtagagagtattatggatactgctgcagaacagata 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5321 aacgttgagttgaatctagagaaagtagagagtattatggatactgctgcagaacagata 5380

                                                                        
Query: 107  gaaattcaaagagagatagacgatgctttatcaaacgcggttgtcggatctacgataaat 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5381 gaaattcaaagagagatagacgatgctttatcaaacgcggttgtcggatctacgataaat 5440

                                                                        
Query: 167  gatgaagttgatagagaattggaacagttagaccgtgaggttaacggtaccaaggagact 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5441 gatgaagttgatagagaattggaacagttagaccgtgaggttaacggtaccaaggagact 5500

                                                                        
Query: 227  gcacctggtgtgcaagatagactggatcaactcccatcaacaaaggaattgggagaactc 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5501 gcacctggtgtgcaagatagactggatcaactcccatcaacaaaggaattgggagaactc 5560

                                                                        
Query: 287  aaggcttcggaaccagaaaaggaaaatggagagtcccaaaaggaaactccaaaagaagaa 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5561 aaggcttcggaaccagaaaaggaaaatggagagtcccaaaaggaaactccaaaagaagaa 5620

                                                                        
Query: 347  ccactattagcatgaattagaaaggaaatagtatggaaaatagaatgctctaagttcgtc 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5621 ccactattagcatgaattagaaaggaaatagtatggaaaatagaatgctctaagttcgtc 5680

                                                                        
Query: 407  tttgtgaatacaacagtattttgcgtcttgcatttctagctggttgttgaagtttctgta 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5681 tttgtgaatacaacagtattttgcgtcttgcatttctagctggttgttgaagtttctgta 5740

                                                                        
Query: 467  ttatttcattcattcaattaattaataatatatacaaaccattttacatttagatttaca 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5741 ttatttcattcattcaattaattaataatatatacaaaccattttacatttagatttaca 5800

                                                                        
Query: 527  ggaatgggaaattatactttggcatgtaccctttaattatgcagtgcgtattatgatttc 586
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5801 ggaatgggaaattatactttggcatgtaccctttaattaggcagtgcgtattatgatttc 5860

                                                                        
Query: 587  gcaataggatagagggctatgaggaaagaagatnat-acanaagattgtgtcctagaaca 645
            ||||||||| ||||||||||||||||||||||  || ||| |||||||||||||||||||
Sbjct: 5861 gcaataggaaagagggctatgaggaaagaagaaaataacaaaagattgtgtcctagaaca 5920

                                                                        
Query: 646  tgccatggtcatttagatatgaataaaggtatggagttatgattcgtagatgagtgagtg 705
            |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5921 tgccatggtcattagaatatgaataaaggtatggagttatgattcgtagatgagtgagtg 5980

                                                                        
Query: 706  gcttccttttttcaattntcgtcaagccattccaaaaatttctggagtgaaagtactgat 765
            |||| |||||||||||| |||||||||||||||||||| ||||||||||||   ||||||
Sbjct: 5981 gctt-cttttttcaattttcgtcaagccattccaaaaa-ttctggagtgaagtaactgat 6038

                                                                        
Query: 766  gattaagcgagcaccagctctgaagatcccatagtgcgattcaaagggcatactttttaa 825
            ||||||||||||||||||||||| || ||||||||||||||||||||  |||||||| ||
Sbjct: 6039 gattaagcgagcaccagctctgaggaacccatagtgcgattcaaaggcaatacttttcaa 6098

                                                                        
Query: 826  atcaac-acaaccttctctgcagcaacttgttacatagcgt-ttcaccactgacat-gtt 882
            |||||| ||| |||||||||||||| | ||| ||||||||| |||||||||||||| || 
Sbjct: 6099 atcaacaacacccttctctgcagcagcatgtaacatagcgtattcaccactgacatggta 6158

                                       
Query: 883  agcacacctggggaggtcgcgacagat 909
            |||||||   |||||||||||||||||
Sbjct: 6159 agcacacactgggaggtcgcgacagat 6185


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7004
Number of Sequences: 1807
Number of extensions: 7004
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)