BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG02FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig874 936 0.0
3x_Contig769 525 e-149
>3x_Contig874
Length = 1825
Score = 936 bits (472), Expect = 0.0
Identities = 488/492 (99%), Gaps = 1/492 (0%)
Strand = Plus / Minus
Query: 88 ctgcttattgggtaaatcccaataggctgtgaaatactctcccaatacagggttcaatgg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgcttattgggtaaatcccaataggctgtgaaatactctcccaatacagggttcaatgg 445
Query: 148 cttcttgaccgctttaggggcaatatgccaccctgaaaggtaccatttaacaacttttat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttcttgaccgctttaggggcaatatgccaccctgaaaggtaccatttaacaacttttat 385
Query: 208 aaacctttccaattcgtctttttccttatgagcttctagtaaaaggtctgggaattgcaa 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaacctttccaattcgtctttttccttatgagcttctagtaaaaggtctgggaattgcaa 325
Query: 268 ttggtttgcaattctctctaacatcgatttcttctctaaaatgaatgtaggtaaagtgat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttggtttgcaattctctctaacatcgatttcttctctaaaatgaatgtaggtaaagtgat 265
Query: 328 ccgtgacaaatcacaccctggcttcaattgagtaataatacccataaggatggattgacc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccgtgacaaatcacaccctggcttcaattgagtaataatacccataaggatggattgacc 205
Query: 388 cgcatcatcattttcgtcgatatcatcggtatcctctacaatgtttggatcagcaacctg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cgcatcatcattttcgtcgatatcatcggtatcctctacaatgtttggatcagcaacctg 145
Query: 448 agggtgggctgttgaagagatatcgccggtagatgcactgatcttcgacttcagtttaaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 agggtgggctgttgaagagatatcgccggtagatgcactgatcttcgacttcagtttaaa 85
Query: 508 aggcatattgctaattg-attatgatgttcaaataaagtctcttcaattaggaaaacaca 566
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 84 aggcatattgctaattgtattatgatgttcaaataaagtctcttcaattaggtaaacaca 25
Query: 567 ggatcaacgtag 578
| |||||||||
Sbjct: 24 gtttcaacgtag 13
>3x_Contig769
Length = 2663
Score = 525 bits (265), Expect = e-149
Identities = 315/324 (97%), Gaps = 6/324 (1%)
Strand = Plus / Plus
Query: 570 tcaacgtagggactaaaacaaacggtattgaatcagttatcagtccaaacttctgtttta 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tcaacgtagggactaaaacaaacggtattgaatcagttatcagtccaaacttctgtttta 71
Query: 630 tttattagaaatacctagttccgatggtatacaggataaatgatcttcccgtaataaatc 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 tttattagaaatacctagttccgatggtatacaggataaatgatcttcccgtaataaatc 131
Query: 690 tatcagttgatttgaatcaaagaaatcacttaaagtagtaaaacgtggcctgaataatca 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tatcagttgatttgaatcaaagaaatcacttaaagtagtaaaacgtggcctgaataatca 191
Query: 750 acaacgttcaaacagcacttttgaaagatcggtagtctatcaatgctcaacgttctattt 809
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 192 acaacgttcaaacagcacttttgaaagatcggtagtctatcaatgctcaacgtcctattt 251
Query: 810 atagatgtatagccggaataaaattgnaaacctttacttagatacttcctatcccggatt 869
|||||||||||| |||||| |||||| ||||||||||||||||||| |||| ||||| |
Sbjct: 252 atagatgtatag-cggaattaaattgg-aacctttacttagatactt-ctat-ccgga-t 306
Query: 870 agtttcaaaattgttcaaaagttt 893
|||||| |||||||||||||||||
Sbjct: 307 agtttc-aaattgttcaaaagttt 329
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6983
Number of Sequences: 1807
Number of extensions: 6983
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)