BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG02RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1706 1564 0.0
>3x_Contig1706
Length = 16303
Score = 1564 bits (789), Expect = 0.0
Identities = 847/863 (98%), Gaps = 3/863 (0%)
Strand = Plus / Plus
Query: 47 gcttaatagcagattcaaaaatatctcttttttgctctttagtgatatcagctttgagtg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10320 gcttaatagcagattcaaaaatatctcttttttgctctttagtgatatcagctttgagtg 10379
Query: 107 ccacatccagatatatatcccaaatagacttcgatacgcttggaggaaaaatctcaacac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10380 ccacatccagatatatatcccaaatagacttcgatacgcttggaggaaaaatctcaacac 10439
Query: 167 tcctttcgaaaacagccaaagcttctgcttgatggccagaagattcatttaataacgcat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10440 tcctttcgaaaacagccaaagcttctgcttgatggccagaagattcatttaataacgcat 10499
Query: 227 aattaataaacatggctggtgttgctgccttgatgagtattgctgtttcatacgcattta 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10500 aattaataaacatggctggtgttgctgccttgatgagtattgctgtttcatacgcattta 10559
Query: 287 cagctgtaccatagtttcctttgacctccaataagtcaaggtacattgcccataagcgtt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10560 cagctgtaccatagtttcctttgacctccaataagtcaaggtacattgcccataagcgtt 10619
Query: 347 tagatgagaaaattgctgcttgtgctggcgattctcctttctcaaatttttgtaggagta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10620 tagatgagaaaattgctgcttgtgctggcgattctcctttctcaaatttttgtaggagta 10679
Query: 407 attcatgattatctggtatttctaatacaacggacaaaacttttatggcatcgtcaatgc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10680 attcatgattatctggtatttctaatacaacggacaaaacttttatggcatcgtcaatgc 10739
Query: 467 ttctttttagtctgtattcacaccaatataaccaaacattttcaagatctactaaaaatt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10740 ttctttttagtctgtattcacaccaatataaccaaacattttcaagatctactaaaaatt 10799
Query: 527 tgaaagggacgttagtggctttgtccagcaagacctcggatttttcaatatcctcttcaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10800 tgaaagggacgttagtggctttgtccagcaagacctcggatttttcaatatcctcttcaa 10859
Query: 587 aaagtctgcaatattgacaccataattctcctaatagccctggagtagtctgaagtctat 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10860 aaagtctgcaatattgacaccataattctcctaatagccctggagtagtctgaagtctat 10919
Query: 647 agtccacggtaagaacagcatctgcatatactttagctntatcagagatggtatcaaaaa 706
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 10920 agtccacggtaagaacagcatctgcataaactttagctttatcagagatggtatcaaaaa 10979
Query: 707 gcttcactcgttctagccacaatttgatgttgttgggttctcgcctc-attcttagtcgt 765
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 10980 gcttcactcgttctagccacaatttgatgttgttgggttctcgcctcaattctaagtcgt 11039
Query: 766 ttaatct-atagtgtgggtttttattaatgaagttagagtgtccgcatgtagtcttatat 824
||||||| ||||||||| ||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 11040 ttaatctaatagtgtggttttttattaatgaggttagagtgtcggcatgtagtcttatat 11099
Query: 825 ttgcgaacagccgttgcttttctgaaatatcgnctttcaatctttgaattaaattctggg 884
|||||||||||||||||||||||||| ||||| |||||| |||||||| |||||| ||
Sbjct: 11100 ttgcgaacagccgttgcttttctgaattatcgtctttcatcttttgaatt-aattcttgg 11158
Query: 885 gtcaatagctccttcatacgaat 907
||||||||||||| |||||||||
Sbjct: 11159 gtcaatagctcctccatacgaat 11181
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6660
Number of Sequences: 1807
Number of extensions: 6660
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)