BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG03FM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig938 1376 0.0
>3x_Contig938
Length = 2936
Score = 1376 bits (694), Expect = 0.0
Identities = 773/796 (97%), Gaps = 3/796 (0%)
Strand = Plus / Minus
Query: 89 cgattttaggttatctaccggtggtttcgagttatcctcttgcatcatggtctttatccg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2255 cgattttaggttatctaccggtggtttcgagttatcctcttgcatcatggtctttatccg 2196
Query: 149 atctggtgctctggcaggtaacaaagattgaaagaagctaccaccattgtccttcttcgg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2195 atctggtgctctggcaggtaacaaagattgaaagaagctaccaccattgtccttcttcgg 2136
Query: 209 agtgacagcttctgcagcagcagcaggaatactaactgtgacactgctgcggctattctt 268
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2135 agtgacagcagcagcagcagcagcaggaatactaactgtgacactgctgcggctattctt 2076
Query: 269 acctatcttcagtgattcacagtgatgatcttccttcaatctatggttggcacataaatc 328
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2075 acctatcttcagtgattcacagtgatgatcttccttcaatctatggttggcacaaaaatc 2016
Query: 329 accgttgcaagcataacaatggaacggtaggaaatcagtctgtcgacaaaacgaacagtg 388
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2015 accgttgcaagcagaacaatggaacggtaggaaatcagtctgtcgacaaaacgaacagtg 1956
Query: 389 tgtgccgacatctagcataccaacttctttagtcattgcttatcaactgtattatttctt 448
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1955 tgtgccgacatctagcataccaacttctttagtcattgtttatcaactgtattatttctt 1896
Query: 449 cttttagcccttgatcagtcttggtcccggacctggagttctataaaacacatataacac 508
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1895 cttttagcccttgatcagtcttggtcccggacctggagttctataaaacacaaataacac 1836
Query: 509 aaatcgatatcaaagtgagaaactcatcccaagtggcaaacaacctgtgtatattatcgg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835 aaatcgatatcaaagtgagaaactcatcccaagtggcaaacaacctgtgtatattatcgg 1776
Query: 569 ccttgccaggtgctctttatatatataagcgatatgacaaatacgtgccgccatccatat 628
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1775 ccttgccaggtgctctttatatatataagcgatatgacaaatacgtcccgccatccatat 1716
Query: 629 catagccagtgatgatctctgccttactcatcttcattgtacacaagtctatgagagaat 688
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1715 catagccagtgatgatctctgccttactcatcttcattttacacaagtctatgagagaat 1656
Query: 689 actgcggaagatgccagcagaatcacgtgacanatgtatgtataatattcgggtgacgag 748
|||| |||||||||||||| |||||||||||| |||||| |||||||||||||| |||||
Sbjct: 1655 actgtggaagatgccagcaaaatcacgtgacaaatgtatttataatattcgggtaacgag 1596
Query: 749 tgttcctgtctc-atgtgtcaattacagctactctttaatagt-acacagacgnagctat 806
|||||||||||| ||||||||||||||||||||| |||||||| ||||| ||| ||||||
Sbjct: 1595 tgttcctgtctcaatgtgtcaattacagctactc-ttaatagtaacacaaacggagctat 1537
Query: 807 tccaatgatcttctctgctatacagtacattcaaacgaggctacaggtttattctttaca 866
||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1536 tccaatggtcttctctcctatacagtacattcagccgaggctacaggtttattctttaca 1477
Query: 867 taaatgttgttctcca 882
||||||||||||||||
Sbjct: 1476 taaatgttgttctcca 1461
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6172
Number of Sequences: 1807
Number of extensions: 6172
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)