BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG03RM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1123 1281 0.0
>3x_Contig1123
Length = 7020
Score = 1281 bits (646), Expect = 0.0
Identities = 787/826 (95%), Gaps = 6/826 (0%)
Strand = Plus / Plus
Query: 48 cggtgtaccatttgatatcatcttctaacaaatttatgttcttgttggcaacgtctagta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5307 cggtgtaccatttgatatcatcttctaacaaatttatgttcttgttggcaacgtctagta 5366
Query: 108 gttgatcacgattttctttagcattttctttcacttggatgctatgagattgcaaccagt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5367 gttgatcacgattttctttagcattttctttcacttggatgctatgagattgcaaccagt 5426
Query: 168 cgtaaatgttcatccgaagaccaagaatcaaataggtcgctctttaatttgttggactta 227
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427 cgtaaatgt-catccgaagaccaagaatcaaataggtcgctctttaatttgttggactta 5485
Query: 228 tcatatagttgtttcttggccaaatctaacgattccaatgcactcaatctctcctcagag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5486 tcatatagttgtttcttggccaaatctaacgattccaatgcactcaatctctcctcagag 5545
Query: 288 taaacttgagaggccttgtaaatgctttttctaacaagggacaacaattcttccttgtta 347
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5546 taaacttgagaggccttgtaaatgttttttctaacaagggacaacaattcttccttgtta 5605
Query: 348 gccttagccttgtcataagtgacaccgtgcttatctaaccaggctttcaagtcataatca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5606 gccttagccttgtcataagtgacaccgtgcttatctaaccaggctttcaagtcataatca 5665
Query: 408 tcccattgattgaagtaagattcagtcgaatagtaaccggaactacccatctttttattg 467
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5666 tcccattgattgaagtaggattcagtcgaatagtaaccggaactacccagctttttattg 5725
Query: 468 attttatcgaaattctccttggccaatgacttcaaattgtcataagaagtatcggtgtcg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5726 attttatcgaaattctccttggccaatgacttcaaattgtcataagaagtatcggtgtcg 5785
Query: 528 aacttgacaccagcgttcctcatggttttcctcacatgcttcgcagaccaagtgtcatat 587
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| ||
Sbjct: 5786 aacttgacaccagcgttcctcaaggttttcctcaaatccttcgcagaccaagtgtcaaat 5845
Query: 588 aaccaattggaaatagactcagttgtgcttggctctgattggaagttccaccagttattc 647
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 5846 aaccaattggaaatagactcagttgtgcttggttctgattggaagttccaccagttatct 5905
Query: 648 tgatcccttttatccggccagactttccatcacagtttttggttgcgcatgctcagaaca 707
|||||||||| |||||||||||||||||| ||| | ||||||||||||||||||||| ||
Sbjct: 5906 tgatccctttcatccggccagactttccaccac-ggttttggttgcgcatgctcagacca 5964
Query: 708 tttctgactagcgtaagccttcaagttcttc-attggagtgtctgcatcccttttagcag 766
|||||||||||||||| ||||||| |||||| | || ||||||||||||| |||||||||
Sbjct: 5965 tttctgactagcgtaa-ccttcaa-ttcttcaagtgaagtgtctgcatcctttttagcag 6022
Query: 767 agtc-ccagtgtcccttcaatattgaattaatccgtgactaggacaatgttcaaatagat 825
|||| ||||||||| | |||||||||| | | ||||||| |||| |||||||||||
Sbjct: 6023 agtcaccagtgtccttcaaatattgaataatgtcttgactagaccaattttcaaatagat 6082
Query: 826 tggtgcaattaactacttggcaagcagctgcgcataatattaaagc 871
|| ||||| |||||||||||||||||||||| || ||||| |||||
Sbjct: 6083 tgttgcaaataactacttggcaagcagctgcacaaaatatcaaagc 6128
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6138
Number of Sequences: 1807
Number of extensions: 6138
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)