BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG04FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1323 1271 0.0
>3x_Contig1323
Length = 7472
Score = 1271 bits (641), Expect = 0.0
Identities = 660/664 (99%), Gaps = 2/664 (0%)
Strand = Plus / Plus
Query: 87 aacatttatgatctgtcagctgacaaagtctctcaaattgattctacgagtgatgattcg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 aacatttatgatctgtcagctgacaaagtctctcaaattgattctacgagtgatgattcg 3623
Query: 147 ctcatcactgaagtcacatgggtcggaaaccatgaaattattgcaaaagtttcagatcgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3624 ctcatcactgaagtcacatgggtcggaaaccatgaaattattgcaaaagtttcagatcgt 3683
Query: 207 tcttcagacattttgaccgtcatcatggtagatgccgcggatggatcgcgtagtgaagtg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3684 tcttcagacattttgaccgtcatcatggtagatgccgcggatggatcgcgtagtgaagtg 3743
Query: 267 tctcgaatagaagaaagcgatggtgggtggtgggagatcactcacaagaccacttttgtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3744 tctcgaatagaagaaagcgatggtgggtggtgggagatcactcacaagaccacttttgtt 3803
Query: 327 cctaaagataagtcaagatcaagatcatataatggttacattgacttggtaccggttgat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3804 cctaaagataagtcaagatcaagatcatataatggttacattgacttggtaccggttgat 3863
Query: 387 ggctacaatcatctcgtatactttacaacaaacgtaaccacagagattccaagtgttgtc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3864 ggctacaatcatctcgtatactttacaacaaacgtaaccacagagattccaagtgttgtc 3923
Query: 447 ttaacctcaggtgaatgggaagtcgtggatggaccagctgctttcgatgaagagttcaac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3924 ttaacctcaggtgaatgggaagtcgtggatggaccagctgctttcgatgaagagttcaac 3983
Query: 507 aatgtatatttcattgctactaaaaagtcatcgacggaaagacatttatattacgtcaat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3984 aatgtatatttcattgctactaaaaagtcatcgacggaaagacatttatattacgtcaat 4043
Query: 567 ttagaaaggccacagaaggtttatgctgttaccgatgaaaggttaaatgggtactattct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4044 ttagaaaggccacagaaggtttatgctgttaccgatgaaaggttaaatgggtactattct 4103
Query: 627 gcttctttctcagcaggcgcaagattcttgctattgaactacttangaccagatgtcctt 686
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 4104 gcttctttctcagcaggcgcaagattcttgctattgaactacttaggaccagatgtccct 4163
Query: 687 tatcaaaaagat-attgatttaaagtcagacactaaagataagaatattcgaggaaatat 745
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4164 tatc-aaaagataattgatttaaagtcagacactaaagataagaatattcgaggaaatat 4222
Query: 746 catc 749
||||
Sbjct: 4223 catc 4226
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6181
Number of Sequences: 1807
Number of extensions: 6181
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)