BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZG04RM1.SCF screened BAC_end
         (965 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1222                                                        1215   0.0  

>3x_Contig1222 
          Length = 5224

 Score = 1215 bits (613), Expect = 0.0
 Identities = 669/685 (97%), Gaps = 2/685 (0%)
 Strand = Plus / Plus

                                                                        
Query: 50   gctttataattgttctaaaatgtgaaccaaccttactccatgctaacagactctctagac 109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3644 gctttataattgttctaaaatgtgaaccaaccttactccatgctaacagactctctagac 3703

                                                                        
Query: 110  tgtctagtccgctagttactacacgatcaataatttcgatcggaagactcattacttttg 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3704 tgtctagtccgctagttactacacgatcaataatttcgatcggaagactcattacttttg 3763

                                                                        
Query: 170  tacccttaaatcttcttctcctccttcttatcattagcaaatctgtcaaaagtgtcaact 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3764 tacccttaaatcttcttctcctccttcttatcattagcaaatctgtcaaaagtgtcaact 3823

                                                                        
Query: 230  aatgcagcttatcttgcacgttgtaaactaggtccttataattcaactgatttcaagtac 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3824 aatgcagcttatcttgcacgttgtaaactaggtccttataattcaactgatttcaagtac 3883

                                                                        
Query: 290  gctggtatatccaagatgcctttagacttcttccagtgtttgggtcagttgagcaatctg 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3884 gctggtatatccaagatgcctttagacttcttccagtgtttgggtcagttgagcaatctg 3943

                                                                        
Query: 350  ttccgtaatctgtcgctttattctttaatatgctgactcaacctcaaagaacgttcggaa 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3944 ttccgtaatctgtcgctttattctttaatatgctgactcaacctcaaagaacgttcggaa 4003

                                                                        
Query: 410  tacattttgacacttaaagtaccgataaaattgtggattttgttgcctataattgtaagc 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4004 tacattttgacacttaaagtaccgataaaattgtggattttgttgcctataattgtaagc 4063

                                                                        
Query: 470  aatgaaatatgtttgatattccacctactggaccgtaccaacctacagattgcagcagta 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4064 aatgaaatatgtttgatattccacctactggaccgtaccaacctacagattgcagcagta 4123

                                                                        
Query: 530  tctcgtccaataacaacttccctgtctcagtttggcctcttaatccttcttactgacatt 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4124 tctcgtccaataacaacttccctgtctcagtttggcctcttaatccttcttactgacatt 4183

                                                                        
Query: 590  atatctcattacccggacataacatgtcaaaatgatactcaaggcaatcacattaagttc 649
            ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 4184 atatctcattacccggacataacatgtcaaaatgatactcaaggcatcaacattaagttc 4243

                                                                        
Query: 650  atttaaacaggtcatgccaattatttgagaatggaagattaagggagaagaagaagagat 709
            ||||||||||  ||||| ||| |||  |||||| | ||| |||| |||||||||||||||
Sbjct: 4244 atttaaacagtacatgcaaataattgaagaatgaaggataaaggaagaagaagaagagat 4303

                                     
Query: 710  tggccggccctggaggacacctttt 734
            | |||||| || |||||||||||||
Sbjct: 4304 t-gccggcact-gaggacacctttt 4326


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8187
Number of Sequences: 1807
Number of extensions: 8187
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)