BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG05FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1712 1520 0.0
>3x_Contig1712
Length = 23668
Score = 1520 bits (767), Expect = 0.0
Identities = 823/835 (98%), Gaps = 5/835 (0%)
Strand = Plus / Plus
Query: 87 tggctcgttgaaaaactgccatgtatttgtatgaagcaaaatccgttctgtcataataat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10733 tggctcgttgaaaaactgccatgtatttgtatgaagcaaaatccgttctgtcataataat 10792
Query: 147 tatagtcacattttatataattatgaggcgttcttataaataacttctatttacgtaaga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10793 tatagtcacattttatataattatgaggcgttcttataaataacttctatttacgtaaga 10852
Query: 207 atacactaatcgtgtggggtttgatacatgttctgatgaggaactgaaagaacagtattt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10853 atacactaatcgtgtggggtttgatacatgttctgatgaggaactgaaagaacagtattt 10912
Query: 267 tatagttggccaatagacttttccaaagcatcgacaaagatgtcagcatgcttttcttcg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10913 tatagttggccaatagacttttccaaagcatcgacaaagatgtcagcatgcttttcttcg 10972
Query: 327 aaagttaaggatggtcttagtctaacagacttttcagcacaaccaccgacgttgcagcca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10973 aaagttaaggatggtcttagtctaacagacttttcagcacaaccaccgacgttgcagcca 11032
Query: 387 ttgctcttcaagagcttcaatagctggtctctttcagccgaagtttccaaatcaaaagcg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11033 ttgctcttcaagagcttcaatagctggtctctttcagccgaagtttccaaatcaaaagcg 11092
Query: 447 ataaatgtaccacggttcttacctctcaagttgatcaatctggttgggtattttgcttgc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11093 ataaatgtaccacggttcttacctctcaagttgatcaatctggttgggtattttgcttgc 11152
Query: 507 aatttttccaacttttcgaacaagtaatcaccgacacgagcacattgatctaccaagttg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11153 aatttttccaacttttcgaacaagtaatcaccgacacgagcacattgatctaccaagttg 11212
Query: 567 ttgtctacgatttcttgaccaatggcaccagcaataatcattctagctggatcaccacac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11213 ttgtctacgatttcttgaccaatggcaccagcaataatcattctagctggatcaccacac 11272
Query: 627 caggtgttgaattgtctgtaagccttattaggaatgaatctgtcatcgtggaaccagtaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11273 caggtgttgaattgtctgtaagccttattaggaatgaatctgtcatcgtggaaccagtaa 11332
Query: 687 ccagcggattggaacttcttggagatagtgaccaaatcaactggtggttgaatgtcagcc 746
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 11333 ccagcggattggaacttcttggagaaagtgaccaaatcaactggtggttgaatgtcagcc 11392
Query: 747 cattcgtggcaccagtatctaccagtagcaccgacaccagtttgaacttcatcaatgatg 806
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 11393 cattcgtggcaccagaacttaccagtagcaccgacaccagtttgaacttcatcaatgatg 11452
Query: 807 taaacgacgttgtattttggaggtcaaatctctcaagctttgc-agaagtatttgga-gc 864
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 11453 taaacgacgttgta-tttggaggtcaaatctctcaagctttgcaagaagtatttggaggc 11511
Query: 865 gttgttgtcaccacccttcggatggatta-gttcgatgatcaaagcagcgactgg 918
|| |||||||||| ||||||||| || || |||||||||||||||||||||||||
Sbjct: 11512 gtggttgtcacca-ccttcggattgaataggttcgatgatcaaagcagcgactgg 11565
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6289
Number of Sequences: 1807
Number of extensions: 6289
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)