BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG05RM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1756 1415 0.0
>3x_Contig1756
Length = 16846
Score = 1415 bits (714), Expect = 0.0
Identities = 816/844 (96%), Gaps = 5/844 (0%)
Strand = Plus / Plus
Query: 46 tctagttgaatcactgatttgccttctattaatcttaaatcttcgtcacgtatttgcatc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14169 tctagttgaatcactgatttgccttctattaatcttaaatcttcgtcacgtatttgcatc 14228
Query: 106 gagtccttttcaaaagctaattctttatctctttgattctttaagaataacctttcttgt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14229 gagtccttttcaaaagctaattctttatctctttgattctttaagaataacctttcttgt 14288
Query: 166 tcaatgaattgttcgtctacaatccccttttgtctcatttctaacttcttggcttcaaat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14289 tcaatgaattgttcgtctacaatccccttttgtctcatttctaacttcttggcttcaaat 14348
Query: 226 tcagctctcagtttcttgaattcgagccgctgccttcttctaacgtctgtaacatgctct 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14349 tcagctctcagtttcttgaattcgagccgctgccttcttctaacgtctgtaacatgctct 14408
Query: 286 aagttgattcgatcagcatcatttatttgcaatcgagacattgttcttgcctgccagttg 345
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 14409 aagttgattcgatcagcatcatttagttgcaatcgagacattgttcttgcctgccagttg 14468
Query: 346 ggttcactccgagatagttgaccagtaccaaagaatccgtgttcccataaatacttcatc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14469 ggttcactccgagatagttgaccagtaccaaagaatccgtgttcccataaatacttcatc 14528
Query: 406 tgccattgatcacataccaaaatttgacctaattggttgatcttgacgtcaataattctg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14529 tgccattgatcacataccaaaatttgacctaattggttgatcttgacgtcaataattctg 14588
Query: 466 gtttcactccatctcatcgcccaatctaatatccaggaaaatgcctgatagggatgtttc 525
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 14589 gtttcactccatctcatcgcccaatctaatatccaggaaaatgcctgaaagggatgtttc 14648
Query: 526 catacagacggtacatgctgcgcctctatatgcaacgcatgtttgtattgcagctgattt 585
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 14649 catacagacggtacaggctgcgcctctataggcaacgcatgtttgtattgcagctgattt 14708
Query: 586 ctatgagatcgcttcgacattgtaagtacttgcctcccgcggtcttcatatatagntact 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 14709 ctatgagatcgcttcgacattgtaagtacttgcctcccgcggtcttcatatatagttact 14768
Query: 646 aaacatgcaagagagattagcattggacanaatatggttttataactgatctctaattca 705
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 14769 aaacatgcaagagagattagcattggacaaaatatggttttataactgatctctaattca 14828
Query: 706 aaagaaatatagttttcataactaaaaactcgaattagcagtacagagttaaagagtgat 765
|||||| || ||||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 14829 aaagaatta-agtttcaataactaaaaactcgaataagcagtacagagttaaggagtgat 14887
Query: 766 tttatgtttacatattttacttagaggggttcgaatttagagtggagaaaggacaaatca 825
||| |||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||
Sbjct: 14888 attaggtttacatattttactaagaggggtacgaa-ttagagtagagaaaggacaaatca 14946
Query: 826 gataccggttggagtcttatgtagaaatcgtgtgccccccatggaaataaatttttcgag 885
|||||| |||| |||| ||| |||||||||||| | | ||| |||||||||| ||||||
Sbjct: 14947 gatacc-gttgtagtc-tattgagaaatcgtgtg-ctcacattgaaataaattcttcgag 15003
Query: 886 acat 889
||||
Sbjct: 15004 acat 15007
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6582
Number of Sequences: 1807
Number of extensions: 6582
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)