BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG06FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1526 0.0
>3x_Contig1640
Length = 15521
Score = 1526 bits (770), Expect = 0.0
Identities = 818/829 (98%), Gaps = 4/829 (0%)
Strand = Plus / Plus
Query: 87 atgatggataaggatattagagaagctatgcagaaattcaaatcagagatggacaaatct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2026 atgatggataaggatattagagaagctatgcagaaattcaaatcagagatggacaaatct 2085
Query: 147 ggcataaatttgggtcctgaccaactagggcctttgatgaaagttctaggaatcgaaaag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2086 ggcataaatttgggtcctgaccaactagggcctttgatgaaagttctaggaatcgaaaag 2145
Query: 207 aagtaatattgttcaatgacttcctgcatctcacttcctgattattcactggaagaatca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2146 aagtaatattgttcaatgacttcctgcatctcacttcctgattattcactggaagaatca 2205
Query: 267 tcaggcatgttgataatagactgtctgtttgtatactttatgtcaatagatatctatact 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2206 tcaggcatgttgataatagactgtctgtttgtatactttatgtcaatagatatctatact 2265
Query: 327 atacttttacaacaaatatgtatattttatgaaattatttcattgcaggattgattggct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2266 atacttttacaacaaatatgtatattttatgaaattatttcattgcaggattgattggct 2325
Query: 387 tggggttgtgatatattgaatgtaagtggaaatataccttgcactttggacatgattctt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2326 tggggttgtgatatattgaatgtaagtggaaatataccttgcactttggacatgattctt 2385
Query: 447 agtttaatgaaatatcctttttttatttggccaagtaagataataaatccacctttgtga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2386 agtttaatgaaatatcctttttttatttggccaagtaagataataaatccacctttgtga 2445
Query: 507 caatatggactgggttcagaccctcagtaatgatagctgctgagttcttttcaaagaaag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2446 caatatggactgggttcagaccctcagtaatgatagctgctgagttcttttcaaagaaag 2505
Query: 567 agttcaactcagacaaagttgtattgacatcgaaacgaacaaatatcttcttatgagact 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2506 agttcaactcagacaaagttgtattgacatcgaaacgaacaaatatcttcttatgagact 2565
Query: 627 tgtcggcgttataggaagagatgtcatcaaagttattcaacttacggaaatcaaagaaca 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2566 tgtcggcgttataggaagagatgtcatcaaagttattcaacttacggaaatcaaagaaca 2625
Query: 687 gacttttaatgctagaaacatccttggaagtggataatttctttaataattgagacanag 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2626 gacttttaatgctagaaacatccttggaagtggataatttctttaataattgagacaaag 2685
Query: 747 ttaccaaaccgcacaactttccatcctttgttaacacaggtagttgatcgaacgagttat 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2686 ttaccaaaccgcacaactttccatcctttgttaacacaggtagttgatcgaacgagttat 2745
Query: 807 ctcttaaaatcttgatgacagtagcaacaagaatcgtctttcttcaacagagaccactgg 866
|||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||
Sbjct: 2746 ctcttaaaatcttgatgacagtagcaac-agaagcgtc-ttcttcaacagagaccactgg 2803
Query: 867 ttttcaggtcatatcctttcacgtttggcatcttcaaaaacatcggttt 915
||| || ||| |||| |||||| ||||||||||||||||||||||||
Sbjct: 2804 tttcaagttcaaatcc-ttcacg-gtggcatcttcaaaaacatcggttt 2850
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7939
Number of Sequences: 1807
Number of extensions: 7939
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)