BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZG06RM1.SCF screened BAC_end
         (904 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1581                                                        1459   0.0  

>3x_Contig1581 
          Length = 11429

 Score = 1459 bits (736), Expect = 0.0
 Identities = 842/868 (97%), Gaps = 8/868 (0%)
 Strand = Plus / Minus

                                                                         
Query: 45    cttcgatgtgaaaaactcgggataactacagcattattatgagaatgactatgcatcgaa 104
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 10978 cttcgatgtgaaaaactcgggaaaactacagcattattatgagaatgactatgcatcgaa 10919

                                                                         
Query: 105   attacttgcaaattgtggaatcaaagaatggttaaaattgaaaggttatgagtccttagc 164
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10918 attacttgcaaattgtggaatcaaagaatggttaaaattgaaaggttatgagtccttagc 10859

                                                                         
Query: 165   acaaaaatgaaatattagcacgcaattacgctatcagaaaagtttaaatagattgaaacc 224
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 10858 acaaaaatgaaatattagcacgcaattacgctatcagaaaagtttaaatagaatgaaacc 10799

                                                                         
Query: 225   tgtacatatgatgaatgtaataaatatgatatgctaattaatttaaagatgtataaattt 284
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10798 tgtacatatgatgaatgtaataaatatgatatgctaattaatttaaagatgtataaattt 10739

                                                                         
Query: 285   ataaaggttgtgtatctgattatgcagcgcatgaaaacgagataggaatgtatatagtag 344
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10738 ataaaggttgtgtatctgattatgcagcgcatgaaaacgagataggaatgtatatagtag 10679

                                                                         
Query: 345   ccaggttaaaattatgtattaatgatgtctcgatgttgaagggaaggcgtaagttttaaa 404
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10678 ccaggttaaaattatgtattaatgatgtctcgatgttgaagggaaggcgtaagttttaaa 10619

                                                                         
Query: 405   acaagtttgggaatagttgtggatggcattttagaatctcttcatattgaagcccactgc 464
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10618 acaagtttgggaatagttgtggatggcattttagaatctcttcatattgaagcccactgc 10559

                                                                         
Query: 465   taatgtcttggaaatcatataacatatagcagagacaaatgacgtgacaccgcaccaaat 524
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10558 taatgtcttggaaatcatataacatatagcagagacaaatgacgtgacaccgcaccaaat 10499

                                                                         
Query: 525   tacatagtggtcatagcccttgaaactcttttctggtccgatgatggcacctgtaatagg 584
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10498 tacatagtggtcatagcccttgaaactcttttctggtccgatgatggcacctgtaatagg 10439

                                                                         
Query: 585   aactgctactaaagtaccaaatgcgacaacaaagtacattgtagaatatcttcttccgaa 644
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10438 aactgctactaaagtaccaaatgcgacaacaaagtacattgtagaatatcttcttccgaa 10379

                                                                         
Query: 645   ttcttcagtctttgagatttgtccacagcagacaggtaagatactgaagatacttnncgg 704
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||   | 
Sbjct: 10378 ttcttcagtctttgagatttgtccacagcagacaggtaagatactgaagatacttccgga 10319

                                                                         
Query: 705   agataatccatanatggcactgaatgcgaat-acaccgctctggtagtggc-ataggtaa 762
             ||| |||||||| |||||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct: 10318 agaaaatccataaatggcactgaatgcgaataacaccgctctggtagtggcaaaaggtaa 10259

                                                                         
Query: 763   ccacatcacataagttattatgccaagaaacactagcgttatcattggcacgttaaacct 822
             |||||||||| |||||||||||||||||||||||||||| |||||||  |||||||||||
Sbjct: 10258 ccacatcacaaaagttattatgccaagaaacactagcgtaatcattgcaacgttaaacct 10199

                                                                         
Query: 823   tccggagat-tcactgaagaattctggt-accatctncctgttatacgggcaa-gttaac 879
             |||| |||| |||||||||||| ||||| ||||||| |||| ||||| ||||| ||||||
Sbjct: 10198 tccgaagatatcactgaagaatcctggtaaccatctccctggtataccggcaaggttaac 10139

                                         
Query: 880   ta-catgacc-atagat-actatcagat 904
             || ||||||| |||||| ||||||||||
Sbjct: 10138 taccatgaccaatagataactatcagat 10111


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6239
Number of Sequences: 1807
Number of extensions: 6239
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)