BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG07FM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig768 1386 0.0
>3x_Contig768
Length = 2062
Score = 1386 bits (699), Expect = 0.0
Identities = 757/770 (98%), Gaps = 5/770 (0%)
Strand = Plus / Minus
Query: 87 gtgccaactacgcaccatgtatcttgcctcaattgcaagctgctgaacgtggttaccaac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gtgccaactacgcaccatgtatcttgcctcaattgcaagctgctgaacgtggttaccaac 711
Query: 147 aaaacttgtggttgttcggtccagaaaagaacatcactgaagtcggtactatgaacgtct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 aaaacttgtggttgttcggtccagaaaagaacatcactgaagtcggtactatgaacgtct 651
Query: 207 tcttcgtgttcaaggactccaagaccggcaagaaggaattggttactgctccattggacg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tcttcgtgttcaaggactccaagaccggcaagaaggaattggttactgctccattggacg 591
Query: 267 gtaccattttggaaggtgtcactagagactctattctacaattggccagagaaaacttga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gtaccattttggaaggtgtcactagagactctattctacaattggccagagaaaacttga 531
Query: 327 actctgacgagtggatcgtctctgaacgttactacactatcaccgaagtggaagaaagag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 actctgacgagtggatcgtctctgaacgttactacactatcaccgaagtggaagaaagag 471
Query: 387 ctgccaagggcgaattggtcgaagcgttcggttccggtaccgctgctgtcgtgtctccaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ctgccaagggcgaattggtcgaagcgttcggttccggtaccgctgctgtcgtgtctccaa 411
Query: 447 tcaaggaaatcggctggaacggtcacgatatccaagtgccattgttgcctggtgaacaat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tcaaggaaatcggctggaacggtcacgatatccaagtgccattgttgcctggtgaacaat 351
Query: 507 gtggtccattgaccaagcaagtggctgaatggattgccgatatccaatatggcagaaaag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtggtccattgaccaagcaagtggctgaatggattgccgatatccaatatggcagaaaag 291
Query: 567 aacacaagggatggtcccgtatcgttgctgacttgaactaaataacctaaatacaaccta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aacacaagggatggtcccgtatcgttgctgacttgaactaaataacctaaatacaaccta 231
Query: 627 ccgtgattatgtgtcactagcaactatgtagcacggatcaggtagctcaaatagtttctc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ccgtgattatgtgtcactagcaactatgtagcacggatcaggtagctcaaatagtttctc 171
Query: 687 tattccctcttantaactgttctctctttaaagcttcattatttccttatctatagtcat 746
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tattccctcttataaactgttctctctttaaagcttcattatttccttatctatagtcat 111
Query: 747 tattttaaagg-aaagctttgaaatgaatcatcatttctcctatcata-caataagac-a 803
||||||||||| ||||||||||||||||||||||||||| ||| ||| ||||||||| |
Sbjct: 110 tattttaaaggaaaagctttgaaatgaatcatcatttcttctacaataccaataagacaa 51
Query: 804 agggt-aagtgggaaaga-cgggtcctgtattcagccatggattattgcc 851
||||| |||||| ||||| || ||||||||||||||||| ||||||||||
Sbjct: 50 agggtaaagtggtaaagaccgtgtcctgtattcagccattgattattgcc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5393
Number of Sequences: 1807
Number of extensions: 5393
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)