BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG07RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1313 1526 0.0
>3x_Contig1313
Length = 8010
Score = 1526 bits (770), Expect = 0.0
Identities = 846/863 (98%), Gaps = 7/863 (0%)
Strand = Plus / Plus
Query: 47 cttgattacattctttttattatatttaatgtgttcttagaatttcccaatgtagacctc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2718 cttgattacattctttttattatatttaatgtgttcttagaatttcccaatgtagacctc 2777
Query: 107 tctctattcttgtccttt-aatagtttttttctccactaaggaatagcctttgtttaaat 165
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2778 tctctattcttgtcctttcaatagtttttttctccactaaggaatagcctttgtttaaat 2837
Query: 166 cccaaacaaaatgaaatcgttctttcacattaaatcttgaactcttgaatggaaactcgg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2838 cccaaacaaaatgaaatcgttctttcacattaaatcttgaactcttgaatggaaactcgg 2897
Query: 226 caagtatggcagaccagttccttcacgctagataaaacattggctggtcggagttgtgtt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2898 caagtatggcagaccagttccttcacgctagataaaacattggctggtcggagttgtgtt 2957
Query: 286 aagaaaaaattatgttgaaacggattcttgtacttgattttgatggcactatcaccacta 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2958 aagaaaaaattatgttgaaacggattcttgtacttgattttgatggcactatcaccacta 3017
Query: 346 gtgataccaccagtatcattgggcaatctgtttacaatttgaaatcagtacctgtcgcat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3018 gtgataccaccagtatcattgggcaatctgtttacaatttgaaatcagtacctgtcgcat 3077
Query: 406 ggactcattataccaagatatacgaggaatgctatattccaaaaccagagaatttggcac 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3078 ggactcattataccaagatatacgaggaatgctatattccaaaaccagagaatttggcac 3137
Query: 466 ctgatgcttggaaagtggtttgtgattatgaacgtgcaagcagaaggtgtgagctaagtt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3138 ctgatgcttggaaagtggtttgtgattatgaacgtgcaagcagaaggtgtgagctaagtt 3197
Query: 526 caatcaacgaactagaattgcaggatcattttaaagatgtggtgatcaaagatctcctgc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3198 caatcaacgaactagaattgcaggatcattttaaagatgtggtgatcaaagatctcctgc 3257
Query: 586 agctcgttaaggaataagtagatatcagacctggattacaggagctgatgcagcagtata 645
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3258 agctcgttaaggaaaaagtagatatcagacctggattacaggagctgatgcagcagtata 3317
Query: 646 acaagacgtacgtgctttcgttgaactggtccaaggacctcatacacgacctaacgggta 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3318 acaagacgtacgtgctttcgttgaactggtccaaggacctcatacacgacctaacgggta 3377
Query: 706 tttccaaatcggatatctactngtacgaattaaaatcacgtgatgggggaagtttacagc 765
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 3378 tttccaaatcggatatctactgtaacgaattaaaatcacgtgat-ggggaagtttacagc 3436
Query: 766 ggacaatttacaatgc-aatattgaccgnttgggac-agtacgagatgttgaaagaga-t 822
||||||||||||| || ||||||||||| ||||||| ||||||||||||||||||||| |
Sbjct: 3437 ggacaatttacaaagcaaatattgaccggttgggacaagtacgagatgttgaaagagatt 3496
Query: 823 tgcgatttatacaaa-tgcaaggggaccagagcatatc-tatattgnagatagttttggc 880
||||||||| ||||| |||||||||||||||||||| | ||||||| |||||||||||||
Sbjct: 3497 tgcgatttagacaaagtgcaaggggaccagagcataacttatattggagatagttttggc 3556
Query: 881 gatttgccctgtattctggcaaa 903
|||||||| ||||||||||||||
Sbjct: 3557 gatttgccttgtattctggcaaa 3579
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6623
Number of Sequences: 1807
Number of extensions: 6623
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)