BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG08FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1335 1413 0.0
>3x_Contig1335
Length = 8696
Score = 1413 bits (713), Expect = 0.0
Identities = 772/789 (97%), Gaps = 2/789 (0%)
Strand = Plus / Minus
Query: 85 cttgcatattaatcatattttctcacttaaaacactaagatactatgtcaattcctagta 144
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5999 cttgcatattaatcagattttctcacttaaaacactaagatactatgtcaattcctagta 5940
Query: 145 aatcctactaatttgcttctgaactttattgatctcgcgtaaacacttacctgaggacat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5939 aatcctactaatttgcttctgaactttattgatctcgcgtaaacacttacctgaggacat 5880
Query: 205 atgcttcgatcattagacagatctctttgtattctgtacttttccaaggtttcgacacga 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5879 atgcttcgatcattagacagatctctttgtattctgtacttttccaaggtttcgacacga 5820
Query: 265 tttttttcgattctaaatagagaatttccgaaaacggtagataaacgtgactatcatgtg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5819 tttttttcgattctaaatagagaatttccgaaaacggtagataaacgtgactatcatgtg 5760
Query: 325 gatagaaatggggaaggtgacaacacttggattcgggattcggtgaggaaccacaatata 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5759 gatagaaatggggaaggtgacaacacttggattcgggattcggtgaggaaccacaatata 5700
Query: 385 cctagaaaagtatcctagattcattgaacaacaggtagttcttaatgattaaattacggt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5699 cctagaaaagtatcctagattcattgaacaacaggtagttcttaatgattaaattacggt 5640
Query: 445 atacattttccaatgttcacgtgactcaaaactgtcatgtgaccgacacaaagaatacac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5639 atacattttccaatgttcacgtgactcaaaactgtcatgtgaccgacacaaagaatacac 5580
Query: 505 tacttagatttcccaattaggagaaacgtaaacattgaaatagtgatataaagtcataga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579 tacttagatttcccaattaggagaaacgtaaacattgaaatagtgatataaagtcataga 5520
Query: 565 aatgcaatgctacatgtgtagaaaccacattacagtgttcatcacgacaacctataaaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5519 aatgcaatgctacatgtgtagaaaccacattacagtgttcatcacgacaacctataaaac 5460
Query: 625 tgctattcaggagccaggtactaaataagatcaaacagatacaagcctagttcaaagtag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5459 tgctattcaggagccaggtactaaataagatcaaacagatacaagcctagttcaaagtag 5400
Query: 685 ctcatagaataatgactgccggccaatttcaaccattacatcagatacaggattctcaaa 744
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5399 ctcaaagaataatgactgccggccaatttcaaccattacatcagaaacaggattctcaaa 5340
Query: 745 ctgcgagtacatgtttgcacaaggccatgtttaa-tatccatcaccacaccagcttttag 803
||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct: 5339 ctgcgagtacaagtttgcacaaggccatgtttaagaaaccatcaccacaccagctttcag 5280
Query: 804 gaatgaagaacaagtttgcctcttctaaccgtgatttgctctcttccatgttcccggaat 863
|||||||||||||||||| ||| ||| | |||||||||||| ||||||||||| |||
Sbjct: 5279 aaatgaagaacaagtttgcttctcctaccgatgatttgctctc-tccatgttcccagaag 5221
Query: 864 ttgaacgat 872
|||||||||
Sbjct: 5220 ttgaacgat 5212
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5980
Number of Sequences: 1807
Number of extensions: 5980
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)