BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG08RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1173 1324 0.0
>3x_Contig1173
Length = 7454
Score = 1324 bits (668), Expect = 0.0
Identities = 735/750 (98%), Gaps = 6/750 (0%)
Strand = Plus / Minus
Query: 48 cccatattatgagtcctctatcacttgatgaatttaaaaagagctggtttgactgtcatg 107
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 cccatattatgag-cctctatcacttgatgaatttaaaaagagctggtttgactgtcatg 1006
Query: 108 gtgtgttatgtgtcatggttctcggtgaacttccggagttagattactcagtaccaatta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 gtgtgttatgtgtcatggttctcggtgaacttccggagttagattactcagtaccaatta 946
Query: 168 accgctctgaagaaatagatgaagtattaggcctgaaatatagtgaaaggtttacgtcaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 accgctctgaagaaatagatgaagtattaggcctgaaatatagtgaaaggtttacgtcaa 886
Query: 228 cttatatgaaaagaaaggaacgtcgtaatttgaacctcagcattcaatgggagagacagt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 cttatatgaaaagaaaggaacgtcgtaatttgaacctcagcattcaatgggagagacagt 826
Query: 288 gtcttggaatttttgatttaaaacctgcatatccaggccgttcttctcatgtcgccactg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 gtcttggaatttttgatttaaaacctgcatatccaggccgttcttctcatgtcgccactg 766
Query: 348 gcacattcctggtaaatgcaggtattagagggaaaggtattggcaaaactttagtggatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 gcacattcctggtaaatgcaggtattagagggaaaggtattggcaaaactttagtggatt 706
Query: 408 gttttctgaactgggctcctcagcttgggtttacatcgtgttactttccgttggtatacg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gttttctgaactgggctcctcagcttgggtttacatcgtgttactttccgttggtatacg 646
Query: 468 gtactaatgtaggaatacgaagaatatttgagtcatctaactttaggagaattggaaaac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gtactaatgtaggaatacgaagaatatttgagtcatctaactttaggagaattggaaaac 586
Query: 528 ttccagaatcaggtattttgaaaggatttgactctccagtagactcattcatatatggta 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttccagaatcaggtattttgaaaggatttgactctccagtagactcattcatatatggta 526
Query: 588 aagagtttactcatgttagtaaacacatgaactctttacattcatcagtggacgacacta 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aagagtttactcatgttagtaaacacatgaactctttacattcatcagtggacgacacta 466
Query: 648 taaatgc-aaatacgaaagactcatatattatctagagcacggagaataccccccatcat 706
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 taaaagcaaaatacgaaagactcatatattatctagagcacggagaataccccccatcat 406
Query: 707 gtnattgnaattgagagggc-agattacgggttatttgcctagaagcattcccttattaa 765
|| || | || ||||| ||| ||||||||||| ||||| |||||||||||||||||||
Sbjct: 405 gtaatagaaa-tgagaaggcaagattacgggtaatttgttaagaagcattcccttattaa 347
Query: 766 cggaaaggctccattttcaaaggaaaggaa 795
|||||| |||||| ||||||||||||||||
Sbjct: 346 cggaaa-gctcca-tttcaaaggaaaggaa 319
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6057
Number of Sequences: 1807
Number of extensions: 6057
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)