BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG09FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1787 1560 0.0
>3x_Contig1787
Length = 34189
Score = 1560 bits (787), Expect = 0.0
Identities = 809/817 (99%)
Strand = Plus / Plus
Query: 94 caaaagttgtaatgaatatacacacttgtttaggcatctcaagtagattcataattttaa 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25304 caaaagttgtaatgaatatacacacttgtttaggcatctcaagtagattcataattttaa 25363
Query: 154 gattaaaaaccaaccactatagtataagcgctaaaattgttgccgtaattatgaatcatt 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25364 gattaaaaaccaaccactatagtataagcgctaaaattgttgccgtaattatgaatcatt 25423
Query: 214 agtaaatctattaaacgatgaaatagccctatctgcagttattaaacctttttttgacac 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25424 agtaaatctattaaacgatgaaatagccctatctgcagttattaaacctttttttgacac 25483
Query: 274 gaaacgcatattaaactcatctgctagatgctccttaagctttgcaaaccgattcttgaa 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25484 gaaacgcatattaaactcatctgctagatgctccttaagctttgcaaaccgattcttgaa 25543
Query: 334 gttagtggaacaataggggcatatcatctcaaagttcttgatatacctttcggatagctc 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25544 gttagtggaacaataggggcatatcatctcaaagttcttgatatacctttcggatagctc 25603
Query: 394 cttgtcaccaggcaagtccaacacaggtagttcatcccatggtataaagaacggggagtt 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25604 cttgtcaccaggcaagtccaacacaggtagttcatcccatggtataaagaacggggagtt 25663
Query: 454 gaaagagttgaaatgctttttgtgctttaatttcttactatggaaatctcttgtcatgac 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25664 gaaagagttgaaatgctttttgtgctttaatttcttactatggaaatctcttgtcatgac 25723
Query: 514 atgtatatgtgtattagccattgatggagtgctatgtactcctgattggacaaaattcgc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25724 atgtatatgtgtattagccattgatggagtgctatgtactcctgattggacaaaattcgc 25783
Query: 574 caagatagcttctttctctttcaaggatatatcttttatgtcatatttttttatgaattg 633
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25784 caagaaagcttctttctctttcaaggatatatcttttatgtcatatttttttatgaattg 25843
Query: 634 agtccaacagaatcgtttagcccaatcaatatgccattgaagctgcaccttgatgccatt 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25844 agtccaacagaatcgtttagcccaatcaatatgccattgaagctgcaccttgatgccatt 25903
Query: 694 gtcgattgtggtgggatgagaattgctgatcttatgacttctgggcaaaactaaaaaatg 753
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 25904 gtcgattgtggtgggatgagaattgctgatcttatgacttcttggcaaaactaaaaaatg 25963
Query: 754 ttcttcagatttanggaactnatcatgtataatggtcgctatgtcgtcaaagtagagtac 813
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 25964 ttcttcagatttagggaacttatcatgtataatggtcgctatgtcgtcaaagtagagtac 26023
Query: 814 ttcaggcaatcgttctggacacaaaacgtacggtctgagaactatgctgaacgagttctt 873
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 26024 ttcaggcaatcgttctggacacaaaacgtacggtctgagacctatgctgaacgagttctc 26083
Query: 874 cctgtttttctcgtcacaatgggcgtttgttacataa 910
||||||||||||||||| ||||||||||| |||||||
Sbjct: 26084 cctgtttttctcgtcaccatgggcgtttggtacataa 26120
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6165
Number of Sequences: 1807
Number of extensions: 6165
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)