BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG09RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1730 1522 0.0
>3x_Contig1730
Length = 17223
Score = 1522 bits (768), Expect = 0.0
Identities = 847/866 (97%), Gaps = 6/866 (0%)
Strand = Plus / Minus
Query: 48 cttcttaagatggctgatacaactactagattctgcatctacggtaatgtgtgacccgtc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13910 cttcttaagatggctgatacaactactagattctgcatctacggtaatgtgtgacccgtc 13851
Query: 108 agtatgaatagtgacagacccatcttcaatcgtgatcagggccaatgactggacagaacc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13850 agtatgaatagtgacagacccatcttcaatcgtgatcagggccaatgactggacagaacc 13791
Query: 168 aaattgtaacatcttcaacgcgtctagattttcctcaaattcacaattaagatcgatgat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13790 aaattgtaacatcttcaacgcgtctagattttcctcaaattcacaattaagatcgatgat 13731
Query: 228 tatggcgaacttggaatgcgtaggcacagcagcagttcctaaatgttttaggtatgacga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13730 tatggcgaacttggaatgcgtaggcacagcagcagttcctaaatgttttaggtatgacga 13671
Query: 288 tgataatggaatattccctagttcattataagcattacaaaaagaacaaaaccacccagc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13670 tgataatggaatattccctagttcattataagcattacaaaaagaacaaaaccacccagc 13611
Query: 348 tcgtgaatctcttgaacataaaaaattcgcaaaccctccacagattttacaattggtata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13610 tcgtgaatctcttgaacataaaaaattcgcaaaccctccacagattttacaattggtata 13551
Query: 408 attctcactgcttgctaggcttgaattcccgtcaattgtcaagtccggctcacaaatggc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13550 attctcactgcttgctaggcttgaattcccgtcaattgtcaagtccggctcacaaatggc 13491
Query: 468 acttatcgatccacggttatcatctccacaatcgagaactctagctaagcaatctgtccg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13490 acttatcgatccacggttatcatctccacaatcgagaactctagctaagcaatctgtccg 13431
Query: 528 ggacgtatgaacggctccataattcaattcaaacatcaagttctagatggtggaatatgc 587
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13430 ggacgtaggaacggctccataattcaattcaaacatcaagttctagatggtggaatatgc 13371
Query: 588 ggacacttgacggatgaaggtgataactctactgtgcgtgtctgctgataggaaaacctt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13370 ggacacttgacggatgaaggtgataactctactgtgcgtgtctgctgataggaaaacctt 13311
Query: 648 tctctggagatgagatccaagnnatagatagagca-gtagcggagaattcaatatcatca 706
||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||
Sbjct: 13310 tctctggagatgagatccaagata-agatagagcaggtagcggagaattcaatatcatca 13252
Query: 707 caagatccggggtatgtatatattaagttcattctctttaattttcagtggttctacgaa 766
||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 13251 caagatccgggtaatgtatatattaggttcattctctttaattttcagtgtttctacgaa 13192
Query: 767 gttgtttatggcatctgnaaaaagctgaaaatttttg-aaaagagaaagctgatagttag 825
||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 13191 gttgtttatggcatctg-aaaaagctgaaaaattttgaaaaagagaaagctgatagttag 13133
Query: 826 tttagcttggttacagaagagatcaccaccatttgtgcacaccatgaatttaaataactc 885
||||||||| |||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct: 13132 tttagcttgattacagaagagatcacca-catttgtgcacacattgtatttaaataactc 13074
Query: 886 ttncaaaagtccatcaatagcactgg 911
|| || ||||||||||||||||||||
Sbjct: 13073 tt-cagaagtccatcaatagcactgg 13049
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6401
Number of Sequences: 1807
Number of extensions: 6401
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)