BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG10RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1488 1396 0.0
>3x_Contig1488
Length = 9807
Score = 1396 bits (704), Expect = 0.0
Identities = 759/771 (98%), Gaps = 5/771 (0%)
Strand = Plus / Minus
Query: 47 tttgatctagtaatgctttgaagaa-cataccgtttaaaaagtgtacgttggatttccta 105
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6223 tttgatctagtaatgctttgaagaaacataccgtttaaaaagtgtacgttggatttccta 6164
Query: 106 gctagtagttaggtgtgtggaagcagtagggtgaggtacgtaaggtgtgtctgataaaga 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6163 gctagtagttaggtgtgtggaagcagtagggtgaggtacgtaaggtgtgtctgataaaga 6104
Query: 166 tggaaacaccaccaccaatttctaaatcagcatcatctgtggaaactagtgtgacgaaac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6103 tggaaacaccaccaccaatttctaaatcagcatcatctgtggaaactagtgtgacgaaac 6044
Query: 226 tattgatttcaactaaacaactattacaaattctgacgcaatggtccaagggcaaagtta 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043 tattgatttcaactaaacaactattacaaattctgacgcaatggtccaagggcaaagtta 5984
Query: 286 ccgagcgtaatgtttccgatgtgtatgttcaattgggtaatgatttcaagttagtcagta 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5983 ccgagcgtaatgtttccgatgtgtatgttcaattgggtaatgatttcaagttagtcagta 5924
Query: 346 gacattttacccatgctagaattgatatttcggatcttggcgatgtgccaaaagaccttc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5923 gacattttacccatgctagaattgatatttcggatcttggcgatgtgccaaaagaccttc 5864
Query: 406 gaagaatattggaggtggcattgagagagactgcatctgaggaaacgttgaataaatacc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5863 gaagaatattggaggtggcattgagagagactgcatctgaggaaacgttgaataaatacc 5804
Query: 466 taccgcagatcagagatattatagttaaactcttggagaaacttaaggttaaacaggcga 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5803 taccgcagatcagagatattatagttaaactcttggagaaacttaaggttaaacaggcga 5744
Query: 526 tgataaaactgagcaggaatgaagatgctttgaaatatcagcatactcctcaaagatctt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5743 tgataaaactgagcaggaatgaagatgctttgaaatatcagcatactcctcaaagatctt 5684
Query: 586 ccgtttcatccgtagtcagcgcaacgacatctttggctggcgcgggaccgacatctactt 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5683 ccgtttcatccgtagtcagcgcaacgacatctttggctggcgcgggaccgacatctactt 5624
Query: 646 cagctcatattgaaacanaacagatacctacgttagaagtttccaaagggttctgaaagc 705
||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 5623 cagctcatattgaaacaaaacagatacctacgttagaag-ttcccaagggttctgaaagc 5565
Query: 706 gatgcgttaactcatttgaaaaaagggaaatattctgcaaagaagaacttcgaagaagtt 765
|||||||||||||| ||| ||||||||||||| ||||||||||||| | ||||||| |||
Sbjct: 5564 gatgcgttaactcaattg-aaaaagggaaataatctgcaaagaagagcctcgaagaggtt 5506
Query: 766 ttcagcgtatcatatggcgaaattatgccaa-caaacagcttcagatccat 815
||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 5505 ttcagcgtatcatatggcgaaatta-gccaaccaaacagcttcagatccat 5456
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6813
Number of Sequences: 1807
Number of extensions: 6813
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)