BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG11FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig696 896 0.0
3x_Contig1463 418 e-117
>3x_Contig696
Length = 2788
Score = 896 bits (452), Expect = 0.0
Identities = 455/456 (99%)
Strand = Plus / Minus
Query: 88 tctacctagaacccacaattgtacccaaacaaaagacttgttgtcgtgaattgccttgaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tctacctagaacccacaattgtacccaaacaaaagacttgttgtcgtgaattgccttgaa 397
Query: 148 gatctttctccattgagccagttgttcttcgctccaaacacctggtgcgttatcgtaacc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gatctttctccattgagccagttgttcttcgctccaaacacctggtgcgttatcgtaacc 337
Query: 208 acctgactgatctgatgggaaagcaccttcagtgataatcatagtacctggatattggga 267
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 acctgactgagctgatgggaaagcaccttcagtgataatcatagtacctggatattggga 277
Query: 268 acgttgtctgtaatattcaacagcccagtcagggtttggaacgttgcctggatgcaacgc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 acgttgtctgtaatattcaacagcccagtcagggtttggaacgttgcctggatgcaacgc 217
Query: 328 tctcattcttgtcaatgcaggcatgacaaccctgtgcttcaattcagtgttaccaatctt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tctcattcttgtcaatgcaggcatgacaaccctgtgcttcaattcagtgttaccaatctt 157
Query: 388 gattggtttgaagatatcagtatcagccaatggctttggttcaaagttcataaacgacat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gattggtttgaagatatcagtatcagccaatggctttggttcaaagttcataaacgacat 97
Query: 448 tgcgtatgcgatttgatttggtttacttgttagtgtgcgtacttttcttaagctaaataa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 tgcgtatgcgatttgatttggtttacttgttagtgtgcgtacttttcttaagctaaataa 37
Query: 508 gggacaattagacaattagacaatgagacaatggct 543
||||||||||||||||||||||||||||||||||||
Sbjct: 36 gggacaattagacaattagacaatgagacaatggct 1
>3x_Contig1463
Length = 9363
Score = 418 bits (211), Expect = e-117
Identities = 305/327 (93%), Gaps = 7/327 (2%)
Strand = Plus / Plus
Query: 600 cttacccgaagtccctttccaattttaccgacattaccattattaatacacagtatccac 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 cttacccgaagtccctttccaattttaccgacattaccattattaatacacagtatccac 74
Query: 660 aatccacatacataacgggaaactcttaggaatcagagaaatcaggtaacagggcagagc 719
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 aatccacatacataacgg-aaactcttaggaatcagagaaatcaggtaacagggcagagc 133
Query: 720 aaacaggatacatatagaacgttccgtcacttacagggtgaagatactttcaaaataagg 779
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 134 aaacaggaaacatatagaacgttccgtcacttacagggtgaagatacttccaaaaaaagg 193
Query: 780 -aaaaaaaaagaattcgttcatctattacaccacatcatcagattccatatgtgccctaa 838
||||||||||| | ||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct: 194 aaaaaaaaaagagtccgttcatctataacaccacatcatcagataccatatgtgccataa 253
Query: 839 acgactgcg-tgctttttcttttttttggtcccttagcttctattcaaaaaaattttttc 897
||||||||| ||| ||||| ||||||||||||| |||||||||| | |||||| ||| ||
Sbjct: 254 acgactgcgctgc-ttttcctttttttggtccc-tagcttctatcccaaaaaagtttctc 311
Query: 898 ggatgtaaattgtgtcaccctagtttt 924
| ||| ||||| ||||| |||||||||
Sbjct: 312 gaatg-aaatt-tgtcagcctagtttt 336
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7834
Number of Sequences: 1807
Number of extensions: 7834
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 2
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)