BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG11RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1734 1409 0.0
>3x_Contig1734
Length = 17938
Score = 1409 bits (711), Expect = 0.0
Identities = 748/758 (98%), Gaps = 2/758 (0%)
Strand = Plus / Plus
Query: 48 taactgattggataattcagtgaaagtttgtcgttttgtgtgttagtttgtgcgtacgtg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5550 taactgattggataattcagtgaaagtttgtcgttttgtgtgttagtttgtgcgtacgtg 5609
Query: 108 tctccttctgtcggcttctctcaacaagtcccgttgtctgaccagtatcacatatttata 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5610 tctccttctgtcggcttctctcaacaagtcccgttgtctgaccagtatcacatatttata 5669
Query: 168 gggtctttcttttgcatggattagtaacccatatcaggtaacccatacagctagctatat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5670 gggtctttcttttgcatggattagtaacccatatcaggtaacccatacagctagctatat 5729
Query: 228 tcaataatggaaaacaaacatatctcgcacgtctctcagattgaaagacgtgctactcct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5730 tcaataatggaaaacaaacatatctcgcacgtctctcagattgaaagacgtgctactcct 5789
Query: 288 ttgaacattcgtccagcttcgccttataccttaaatcctactgtggaaaaagacggttta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5790 ttgaacattcgtccagcttcgccttataccttaaatcctactgtggaaaaagacggttta 5849
Query: 348 tcatggcctagtattggtgctcgtgaaagagcagaggaaacggatgaagaagaacaaaaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5850 tcatggcctagtattggtgctcgtgaaagagcagaggaaacggatgaagaagaacaaaaa 5909
Query: 408 cgggttggtcgtattgcagatgcggttaagactattttgagtgagctcggtgaggatacc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5910 cgggttggtcgtattgcagatgcggttaagactattttgagtgagctcggtgaggatacc 5969
Query: 468 gaacgtgagggtttactggatacccctacacggtacgctaaagcgatgttgtatttcact 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5970 gaacgtgagggtttactggatacccctacacggtacgctaaagcgatgttgtatttcact 6029
Query: 528 aaaggctatcaggataatatcatgaacgatgtgattaagaatgctgtgttcgaggaagat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6030 aaaggctatcaggataatatcatgaacgatgtgattaagaatgctgtgttcgaggaagat 6089
Query: 588 catgacgagatggttattgttcgtgacattgagatcttctctttgtgcgagcatcatttg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6090 catgacgagatggttattgttcgtgacattgagatcttctctttgtgcgagcatcatttg 6149
Query: 648 gtgccatttttcngtaaagttcatattggatacattcctaataggaaggtgttgggttta 707
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 6150 gtgccatttttcggtaaagttcatattggatacattcctaataagaaggtgttgggttta 6209
Query: 708 ttgaaattggctcgtttagcaaagatgtacgctagacgttttcaagtacaggatcgttta 767
| ||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||||
Sbjct: 6210 tcgaaattggctcgtttagcagagatgtacgctagacgtttccaagtacaagaacgttta 6269
Query: 768 acgaagccaaattgctatggcttttgattgatatcttg 805
|||||| |||||||||||||| ||||| ||||||||||
Sbjct: 6270 acgaag-caaattgctatggc-tttgagtgatatcttg 6305
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5675
Number of Sequences: 1807
Number of extensions: 5675
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)