BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG12FM1.SCF screened BAC_end
(848 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig275 509 e-144
>3x_Contig275
Length = 1611
Score = 509 bits (257), Expect = e-144
Identities = 295/308 (95%)
Strand = Plus / Plus
Query: 201 ggtacttgcaatgataatgagttactgcaactaccatttgatctcttgcaggaagaaggt 260
|||| ||| ||||||||||||||| || || || |||||||||||||||||||||||||
Sbjct: 411 ggtaattgaaatgataatgagttaatgaaaataaaatttgatctcttgcaggaagaaggt 470
Query: 261 ttattgttcttgtgggtaaccggccgtgctatcgaagtagggaaagaatcattgcagaat 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttattgttcttgtgggtaaccggccgtgctatcgaagtagggaaagaatcattgcagaat 530
Query: 321 tggggttacgaagtaataaatgaaatatcttggatcaagacaaaccaattaggaagaaca 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tggggttacgaagtaataaatgaaatatcttggatcaagacaaaccaattaggaagaaca 590
Query: 381 attgtgacaggtagaactggccattggttgaaccacagtaaagagcatttactcgtcggg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 attgtgacaggtagaactggccattggttgaaccacagtaaagagcatttactcgtcggg 650
Query: 441 gtcaaaagcantccggaatgcctaaacagataaatagacattgacttgatcattagcgcc 500
|||||| ||| ||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 651 gtcaaaggcaatccggaatggctaaacagaaaaatagacattgacttgatcattagcgca 710
Query: 501 acttgaga 508
||| ||||
Sbjct: 711 actagaga 718
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,313
Number of Sequences: 1807
Number of extensions: 17313
Number of successful extensions: 173
Number of sequences better than 1.0e-20: 1
length of query: 848
length of database: 10,358,551
effective HSP length: 16
effective length of query: 832
effective length of database: 10,329,639
effective search space: 8594259648
effective search space used: 8594259648
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)