BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZG12RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1451 1283 0.0
>3x_Contig1451
Length = 8346
Score = 1283 bits (647), Expect = 0.0
Identities = 718/737 (97%), Gaps = 4/737 (0%)
Strand = Plus / Minus
Query: 49 cttccaatagtccccaaatgcttcaggactctggacttgagaatatatacctcaacaaga 108
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3598 cttccaatag-ccccaaatgcttcaggactctggacttgagaatatatacctcaacaaga 3540
Query: 109 gttggagtgtggttcattgctttgtcagcatatgcattagcctgctcgaactgctttcta 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3539 gttggagtgtggttcattgctttgtcagcatatgcattagcctgctcgaactgctttcta 3480
Query: 169 tgcaaataatgtagagccaaaaagtaagttgtccaaacaaattggattggttgatcagtc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3479 tgcaaataatgtagagccaaaaagtaagttgtccaaacaaattggattggttgatcagtc 3420
Query: 229 gatgatagctcagcataataaggtaatacaatactttcaacaatatccggaataccttcc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3419 gatgatagctcagcataataaggtaatacaatactttcaacaatatccggaataccttcc 3360
Query: 289 ttcttgtaaagaggtttgatgttattgaatgtggctggaacaccgcgatttaactgcgtt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3359 ttcttgtaaagaggtttgatgttattgaatgtggctggaacaccgcgatttaactgcgtt 3300
Query: 349 atgatataatcattgagtttcgcggttaattctaccttatctttgaggaatgtgagcgga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3299 atgatataatcattgagtttcgcggttaattctaccttatctttgaggaatgtgagcgga 3240
Query: 409 atgaatttatgaggctccgatttatggtaaaatatagccaacttttcatataaagctttc 468
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3239 atgaatttaggaggctccgatttagggtaaaatatagccaacttttcatataaagctttc 3180
Query: 469 ctcaacttctcatttccttgaattccaagtgaaacttccaatagcctgtaatatctgaaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3179 ctcaacttctcatttccttgaattccaagtgaaacttccaatagcctgtaatatctgaaa 3120
Query: 529 ttgtctggacttctcttaatcaaagttctgtacacaatagaggcttccttagaccgacca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3119 ttgtctggacttctcttaatcaaagttctgtacacaatagaggcttccttagaccgacca 3060
Query: 589 agtttcattaaaatagaagctttcctctct-accagccatatctatcataaacatcgtcg 647
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3059 agtttcattaaaatagaagctttcctctctaaccagccatatctatcataaacatcgtcg 3000
Query: 648 gaaatcttnnttcaatgctctaaaactcttttcaaggattctttatcgttgcctgccttc 707
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2999 gaaatcttttccaaatgctctaaaactctttccaaggattctttatcgttgcctgccttc 2940
Query: 708 ttgttacaaagatcatttctgtacatgatacattcgttggtctcatacattttctggtt- 766
|||| |||||||||| |||||||||||||||||||| ||||||||| |||||||||
Sbjct: 2939 ttgtacaaaagatcattcttgtacatgatacattcgttgttctcataca-tttctggttc 2881
Query: 767 aacccaacttgccttca 783
| |||||||||||||||
Sbjct: 2880 accccaacttgccttca 2864
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6963
Number of Sequences: 1807
Number of extensions: 6963
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)