BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH01FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1380 1328 0.0
>3x_Contig1380
Length = 6718
Score = 1328 bits (670), Expect = 0.0
Identities = 785/810 (96%), Gaps = 10/810 (1%)
Strand = Plus / Plus
Query: 87 cgcaagtcctcgatctcaaagaaaatcggcagaaattgctgatttatgcgaacagacagc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5184 cgcaagtcctcgatctcaaagaaaatcggcagaaattgctgatttatgcgaacagacagc 5243
Query: 147 agaagaactcaagggcttaatacttgagctaacttcaaacaataaaaaggaaccgggaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244 agaagaactcaagggcttaatacttgagctaacttcaaacaataaaaaggaaccgggaac 5303
Query: 207 tatatctaagtcaaaatccttgccaccactcccacgacctttgctcaatggacaaaagaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5304 tatatctaagtcaaaatccttgccaccactcccacgacctttgctcaatggacaaaagaa 5363
Query: 267 tgcactgcgccataataaaatgtctcctgaaaagcagagaagatatatggagagaataca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5364 tgcactgcgccataataaaatgtctcctgaaaagcagagaagatatatggagagaataca 5423
Query: 327 ggggatacaacactaacacaataacatatatattattctagttagttaatatccggctat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5424 ggggatacaacactaacacaataacatatatattattctagttagttaatatccggctat 5483
Query: 387 gagatggtacggtatgtaatattacagattgtctttttaaatgtcctgtttataatatct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5484 gagatggtacggtatgtaatattacagattgtctttttaaatgtcctgtttataatatct 5543
Query: 447 tgggagatgcgtctgatgaggtcgtagattcctgaattgggctgagggaagaattctgtg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5544 tgggagatgcgtctgatgaggtcgtagattcctgaattgggctgagggaagaattctgtg 5603
Query: 507 taaagcttggagaaggcttcgtgaatgagctgttgggggtaacaggtgaagcaagagttt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5604 taaagcttggagaaggcttcgtgaatgagctgttgggggtaacaggtgaagcaagagttt 5663
Query: 567 tgttatcgagtattcggtcctcgcaattatcttcagactttcgggaatcatggagtaatg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5664 tgttatcgagtattcggtcctcgcaattatcttcagactttcgggaatcatggagtaatg 5723
Query: 627 atgaactgaaaggttcagaatatgacctatgaattgaattatgatcaaaaaatgtgactg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5724 atgaactgaaaggttcagaatatgacctatgaattgaattatgatcaaaaaatgtgactg 5783
Query: 687 gtttattttttatttccaacttggaattaagaggagtggtatctttcaatacaccccagt 746
|||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 5784 ttttattttttatttccaacttgtaattaagaggagtgttatctttcaataca-cccagt 5842
Query: 747 gggccggtcagaatagctattgtgtccttctaaaagctaaaaattttggttcgaattaac 806
|||||||||||||||||| |||||||||||||| ||||||| |||| |||||| | |||
Sbjct: 5843 -ggccggtcagaatagcta-tgtgtccttctaaaggctaaaagtttt-gttcgattcaac 5899
Query: 807 cttacttaaaagtggaaagattccggattatatttctcattcgcccgaaaaattaaaaat 866
| |||||||| || ||||||||||| || |||||| ||| ||| ||| |||||| |||||
Sbjct: 5900 c-tacttaaaggt-gaaagattccgcataatattt-tca-tcgtccg-aaaattcaaaat 5954
Query: 867 cctccgggtttcccattttattcatccaaa 896
||||| ||| |||||||| ||||||||||
Sbjct: 5955 cctcc-ggtatcccatttatttcatccaaa 5983
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6868
Number of Sequences: 1807
Number of extensions: 6868
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)