BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC34ZH01RM1.SCF screened BAC_end (934 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig307 424 e-118 >3x_Contig307 Length = 1772 Score = 424 bits (214), Expect = e-118 Identities = 228/230 (99%), Gaps = 2/230 (0%) Strand = Plus / Plus Query: 48 gcttcacggaaacgaaataatagaggaagtcttctatttgcctgaaccatcagtgtttgt 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1436 gcttcacggaaacgaaataatagaggaagtcttctatttgcctgaaccatcagtgtttgt 1495 Query: 108 gaagaaatctgaagatacaattaaaataaaaagctcatcgtgttatttcacggaatattt 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1496 gaagaaatctgaagatacaattaaaataaaaagctcatcgtgttatttcacggaatattt 1555 Query: 168 aaatctgaaacccaaccgtggggtaaaaaatttcagggccctagtgctaaccactgaggc 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1556 aaatctgaaacccaaccgtggggtaaaaaatttcagggccctagtgctaaccactgaggc 1615 Query: 228 aaaaaatgattgcatgtcttt-cgtatcacaaatgtc-tcagacatattc 275 ||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct: 1616 aaaaaatgattgcatgtctttccgtatcacaaatgtcatcagacatattc 1665 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6199 Number of Sequences: 1807 Number of extensions: 6199 Number of successful extensions: 42 Number of sequences better than 1.0e-20: 1 length of query: 934 length of database: 10,358,551 effective HSP length: 16 effective length of query: 918 effective length of database: 10,329,639 effective search space: 9482608602 effective search space used: 9482608602 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)