BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH02RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1126 1554 0.0
>3x_Contig1126
Length = 5421
Score = 1554 bits (784), Expect = 0.0
Identities = 840/855 (98%), Gaps = 3/855 (0%)
Strand = Plus / Plus
Query: 55 ggcgaggaaccataattgaaaattgaaatcggtgccaaccgttacgatttactgtgtatc 114
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3302 ggcgaggaaccagaattgaaaattgaaatcggtgccaaccgttacgatttactgtgtatc 3361
Query: 115 gaaggtatcgctcaatctttgaatgaatttttgggtaacgttgaagctccagagtataag 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3362 gaaggtatcgctcaatctttgaatgaatttttgggtaacgttgaagctccagagtataag 3421
Query: 175 ttgagcaaaccaactaccaagttaatcattgaagaatctacaactcaaattagaagttac 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3422 ttgagcaaaccaactaccaagttaatcattgaagaatctacaactcaaattagaagttac 3481
Query: 235 gcttgtgctgccatcttaagaaatgttacattcaccgaagccaactatgcatcgttcatt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3482 gcttgtgctgccatcttaagaaatgttacattcaccgaagccaactatgcatcgttcatt 3541
Query: 295 tctcttcaagataagttacactcaaacttgtgtagaaacagaactttagttgccattggt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3542 tctcttcaagataagttacactcaaacttgtgtagaaacagaactttagttgccattggt 3601
Query: 355 acacacgatttggataccattaaaggtcctttccactacagagctgaaaagccaactgac 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3602 acacacgatttggataccattaaaggtcctttccactacagagctgaaaagccaactgac 3661
Query: 415 atcaagtttgtgcccttaaatcaaagtaaggaatacgatggtgcagagttaatcgaattg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3662 atcaagtttgtgcccttaaatcaaagtaaggaatacgatggtgcagagttaatcgaattg 3721
Query: 475 tacaaacaaccagaacaaaagaacaacttgggccgtttcgttcacattatcgaagattcc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3722 tacaaacaaccagaacaaaagaacaacttgggccgtttcgttcacattatcgaagattcc 3781
Query: 535 cctgttttt-cctgtcatctacgatgacaataatgtcgtttgttctctgcctcctttgat 593
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3782 cctgtttttacacttcatctacgatgacaataatgtcgtttgttctctgcctcctttgat 3841
Query: 594 taactctgaacactctanaatttctctgaacaccaagaatatttttatcgaagttactgc 653
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3842 taactctgaacactctaaaatttctctgaacaccaagaatatttttatcgaagttactgc 3901
Query: 654 aaccgatagaaccaagtccgaagttgtcttggaccatatcgttgctatgttctcccgtta 713
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3902 aaccgatagaaccaagtccgaagttgtcttggaccaaatcgttgctatgttctcccgtta 3961
Query: 714 ttgtgaagaccaattcaccgtggagccagtgggaattgtttctgaacacaatcatcaatc 773
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 3962 ttgtgaagaccaattcaccgtggagccagtggaaattgtttctgaacacaacaatcaatc 4021
Query: 774 tagagtaaccccaaatttcacttcaaaaattatgggacgtc-aggtcgattacatcaatt 832
|||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||
Sbjct: 4022 tagagtaaccccaaatttcactccaaaaattat-ggacgtcaaggtcgattacatcaatt 4080
Query: 833 cttgtctatggctaaccttatccccagaagagatctcaaagaacttgaaaaagatgtcgt 892
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4081 cttgtctaggcctaaccttatccccagaagagatctcaaagaacttgaaaaagatgtcgt 4140
Query: 893 tgaaagctacacctt 907
|||||||||||||||
Sbjct: 4141 tgaaagctacacctt 4155
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6910
Number of Sequences: 1807
Number of extensions: 6910
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)