BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH03FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1068 846 0.0
3x_Contig244 517 e-146
>3x_Contig1068
Length = 5568
Score = 846 bits (427), Expect = 0.0
Identities = 433/435 (99%)
Strand = Plus / Minus
Query: 86 taactccaactgcaagcaataagaacacagaagggccaatcacgttagaagatcaagata 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taactccaactgcaagcaataagaacacagaagggccaatcacgttagaagatcaagata 376
Query: 146 ttatcacagattctgatttggatatttaatcgcaggttgtgtttgtacaactgaccacta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttatcacagattctgatttggatatttaatcgcaggttgtgtttgtacaactgaccacta 316
Query: 206 cttaaatattattttttcaagcaacaagacgtatatttactacttccagaacacagttgt 265
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cttaaatattatttcctcaagcaacaagacgtatatttactacttccagaacacagttgt 256
Query: 266 caccacatcgagtattttaaaaaaattcagctattgttgtacatgtttatcttcaattga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 caccacatcgagtattttaaaaaaattcagctattgttgtacatgtttatcttcaattga 196
Query: 326 aatttaaactttcagataatgtagataaggttaataatgatatatctcatcatctcgagg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aatttaaactttcagataatgtagataaggttaataatgatatatctcatcatctcgagg 136
Query: 386 ggatacctgtgtttagttaggtaagacattttacatgaatccacattcagtaatgattct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ggatacctgtgtttagttaggtaagacattttacatgaatccacattcagtaatgattct 76
Query: 446 tttgatccttcaaaagataaaaaaacacacaaatcaagatgtaattgaaccatcacaact 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 tttgatccttcaaaagataaaaaaacacacaaatcaagatgtaattgaaccatcacaact 16
Query: 506 gaacgtattcagaga 520
|||||||||||||||
Sbjct: 15 gaacgtattcagaga 1
>3x_Contig244
Length = 1487
Score = 517 bits (261), Expect = e-146
Identities = 329/348 (94%), Gaps = 4/348 (1%)
Strand = Plus / Minus
Query: 618 ctcatcctcttatataggaaagaccaataaaattttcagtttttccctgttactaaaatt 677
|||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 ctcagcctctgatataggaatgaccaataaaattttcagtttttccctgttactaaaatt 1212
Query: 678 caagaagcgacatttcgaaaagacaacagtgggaaatactagagtttaaaccgtgttatg 737
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1211 caagaagcgacatttcgaaaagacaacagtgggaaatactagagtttaaaccgtgttagg 1152
Query: 738 gttgataaagtggtctc-aaacagatttataccagttaactatgcattcaacgttaattc 796
||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 1151 gttgataaagtggtctcaaaacagatttataccagtaaactaggcattcaacgttaattc 1092
Query: 797 gtgggatttcaccataatctgaacactcgtcgcctacatataacgaacgccgtacggcat 856
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 1091 gtgggatttcaccataatctgaacactcgtcgcctacagaaaacgaacgccgtacggcat 1032
Query: 857 cagcaacaatctttgcctgtatattacccctaccgtgactttgttcaccagtttcttggg 916
||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1031 cagcaacaatcttgccttgtatatta-ccctaccgtgactttgttcaccagtttcttggc 973
Query: 917 catctcatcgaaacaacagcaact--gaagagagaaaaattaaaaaaa 962
||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 972 catctcatcgaaacagcagcaacttgaaagagagaaaaaataaaaaaa 925
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8356
Number of Sequences: 1807
Number of extensions: 8356
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 2
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)